Latent Conservative Objective Models for Data-Driven Crystal Structure
Prediction
- URL: http://arxiv.org/abs/2310.10056v1
- Date: Mon, 16 Oct 2023 04:35:44 GMT
- Title: Latent Conservative Objective Models for Data-Driven Crystal Structure
Prediction
- Authors: Han Qi, Xinyang Geng, Stefano Rando, Iku Ohama, Aviral Kumar, Sergey
Levine
- Abstract summary: In computational chemistry, crystal structure prediction is an optimization problem.
One approach to tackle this problem involves building simulators based on density functional theory (DFT) followed by running search in simulation.
We show that our approach, dubbed LCOMs (latent conservative objective models), performs comparably to the best current approaches in terms of success rate of structure prediction.
- Score: 62.36797874900395
- License: http://creativecommons.org/publicdomain/zero/1.0/
- Abstract: In computational chemistry, crystal structure prediction (CSP) is an
optimization problem that involves discovering the lowest energy stable crystal
structure for a given chemical formula. This problem is challenging as it
requires discovering globally optimal designs with the lowest energies on
complex manifolds. One approach to tackle this problem involves building
simulators based on density functional theory (DFT) followed by running search
in simulation, but these simulators are painfully slow. In this paper, we study
present and study an alternate, data-driven approach to crystal structure
prediction: instead of directly searching for the most stable structures in
simulation, we train a surrogate model of the crystal formation energy from a
database of existing crystal structures, and then optimize this model with
respect to the parameters of the crystal structure. This surrogate model is
trained to be conservative so as to prevent exploitation of its errors by the
optimizer. To handle optimization in the non-Euclidean space of crystal
structures, we first utilize a state-of-the-art graph diffusion auto-encoder
(CD-VAE) to convert a crystal structure into a vector-based search space and
then optimize a conservative surrogate model of the crystal energy, trained on
top of this vector representation. We show that our approach, dubbed LCOMs
(latent conservative objective models), performs comparably to the best current
approaches in terms of success rate of structure prediction, while also
drastically reducing computational cost.
Related papers
- Efficient Symmetry-Aware Materials Generation via Hierarchical Generative Flow Networks [52.13486402193811]
New solid-state materials require rapidly exploring the vast space of crystal structures and locating stable regions.
Existing methods struggle to explore large material spaces and generate diverse samples with desired properties and requirements.
We propose a novel generative model employing a hierarchical exploration strategy to efficiently exploit the symmetry of the materials space to generate crystal structures given desired properties.
arXiv Detail & Related papers (2024-11-06T23:53:34Z) - Unleashing the power of novel conditional generative approaches for new materials discovery [3.972733741872872]
We propose two generative approaches to the problem of crystal structure design.
One is conditional structure modification, using the energy difference between the most energetically favorable structure and all its less stable polymorphs.
The other is conditional structure generation, using the energy difference between the most energetically favorable structure and all its less stable polymorphs.
arXiv Detail & Related papers (2024-11-05T14:58:31Z) - Adaptive Constraint Integration for Simultaneously Optimizing Crystal Structures with Multiple Targeted Properties [7.559885439354167]
Simultaneous Multi-property optimization using Adaptive Crystal Synthesizer (SMOACS)
SMOACS enables the integration of adaptive constraints into the optimization process without necessitating model retraining.
We have demonstrated the band gap optimization while meeting a challenging constraint, that is, maintaining electrical neutrality in large atomic configurations up to 135 atom sites.
arXiv Detail & Related papers (2024-10-11T06:35:48Z) - Complete and Efficient Graph Transformers for Crystal Material Property Prediction [53.32754046881189]
Crystal structures are characterized by atomic bases within a primitive unit cell that repeats along a regular lattice throughout 3D space.
We introduce a novel approach that utilizes the periodic patterns of unit cells to establish the lattice-based representation for each atom.
We propose ComFormer, a SE(3) transformer designed specifically for crystalline materials.
arXiv Detail & Related papers (2024-03-18T15:06:37Z) - Crystalformer: Infinitely Connected Attention for Periodic Structure Encoding [10.170537065646323]
Predicting physical properties of materials from their crystal structures is a fundamental problem in materials science.
We show that crystal structures are infinitely repeating, periodic arrangements of atoms, whose fully connected attention results in infinitely connected attention.
We propose a simple yet effective Transformer-based encoder architecture for crystal structures called Crystalformer.
arXiv Detail & Related papers (2024-03-18T11:37:42Z) - Scalable Diffusion for Materials Generation [99.71001883652211]
We develop a unified crystal representation that can represent any crystal structure (UniMat)
UniMat can generate high fidelity crystal structures from larger and more complex chemical systems.
We propose additional metrics for evaluating generative models of materials.
arXiv Detail & Related papers (2023-10-18T15:49:39Z) - Data-Driven Score-Based Models for Generating Stable Structures with
Adaptive Crystal Cells [1.515687944002438]
This work aims at the generation of new crystal structures with desired properties, such as chemical stability and specified chemical composition.
The novelty of the presented approach resides in the fact that the lattice of the crystal cell is not fixed.
A multigraph crystal representation is introduced that respects symmetry constraints, yielding computational advantages.
arXiv Detail & Related papers (2023-10-16T02:53:24Z) - Crystal-GFN: sampling crystals with desirable properties and constraints [103.79058968784163]
We introduce Crystal-GFN, a generative model of crystal structures that sequentially samples structural properties of crystalline materials.
In this paper, we use as objective the formation energy per atom of a crystal structure predicted by a new proxy machine learning model trained on MatBench.
The results demonstrate that Crystal-GFN is able to sample highly diverse crystals with low (median -3.1 eV/atom) predicted formation energy.
arXiv Detail & Related papers (2023-10-07T21:36:55Z) - Equivariant Parameter Sharing for Porous Crystalline Materials [4.271235935891555]
Existing methods for crystal property prediction either have constraints that are too restrictive or only incorporate symmetries between unit cells.
We develop a model which incorporates the symmetries of the unit cell of a crystal in its architecture and explicitly models the porous structure.
Our results confirm that our method performs better than existing methods for crystal property prediction and that the inclusion of symmetry results in a more efficient model.
arXiv Detail & Related papers (2023-04-04T08:33:13Z) - EBM-Fold: Fully-Differentiable Protein Folding Powered by Energy-based
Models [53.17320541056843]
We propose a fully-differentiable approach for protein structure optimization, guided by a data-driven generative network.
Our EBM-Fold approach can efficiently produce high-quality decoys, compared against traditional Rosetta-based structure optimization routines.
arXiv Detail & Related papers (2021-05-11T03:40:29Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.