Evaluating Deep Learning-based Melanoma Classification using
Immunohistochemistry and Routine Histology: A Three Center Study
- URL: http://arxiv.org/abs/2309.03494v2
- Date: Fri, 8 Sep 2023 15:38:47 GMT
- Title: Evaluating Deep Learning-based Melanoma Classification using
Immunohistochemistry and Routine Histology: A Three Center Study
- Abstract summary: Pathologists routinely use hematoxylin and eosin (H&E)-stained tissue slides against MelanA.
DL MelanA-based assistance systems show the same performance as the benchmark H&E classification.
- Score: 1.4053129774629076
- License: http://creativecommons.org/publicdomain/zero/1.0/
- Abstract: Pathologists routinely use immunohistochemical (IHC)-stained tissue slides
against MelanA in addition to hematoxylin and eosin (H&E)-stained slides to
improve their accuracy in diagnosing melanomas. The use of diagnostic Deep
Learning (DL)-based support systems for automated examination of tissue
morphology and cellular composition has been well studied in standard
H&E-stained tissue slides. In contrast, there are few studies that analyze IHC
slides using DL. Therefore, we investigated the separate and joint performance
of ResNets trained on MelanA and corresponding H&E-stained slides. The MelanA
classifier achieved an area under receiver operating characteristics curve
(AUROC) of 0.82 and 0.74 on out of distribution (OOD)-datasets, similar to the
H&E-based benchmark classification of 0.81 and 0.75, respectively. A combined
classifier using MelanA and H&E achieved AUROCs of 0.85 and 0.81 on the OOD
datasets. DL MelanA-based assistance systems show the same performance as the
benchmark H&E classification and may be improved by multi stain classification
to assist pathologists in their clinical routine.
Related papers
- Towards Reliable Stain Transfer: An Iterative Data-Model Co-Optimization Framework Based on Multimodal Expert-Guided Assessment [55.16957949238588]
We propose DMCoStain, a novel Data-Model Co-optimization framework for Stain transfer.<n>It iteratively co-refines training data and model capability, improving staining accuracy and interpretability in both pathological and structural consistency.<n>To support MEGFS, we construct ImmunoInstruction, the first large-scale IPE instruction-following dataset with 150K VQA samples.
arXiv Detail & Related papers (2026-07-28T07:54:43Z) - GOLDMARK: Governed Outcome-Linked Diagnostic Model Assessment Reference Kit [7.891604152731754]
Computational biomarkers (CBs) are histo-derived patterns extracted from hematoxylin-eosin (H&E) whole-slide images (WSIs) to predict therapeutic response or prognosis.<n>We introduce GOLDMARK, a standardized benchmarking framework built on a curated TCGA cohort with clinically actionable OncoKB level 1-3 biomarker labels.
arXiv Detail & Related papers (2026-03-21T15:09:06Z) - Attention-Based Deep Learning for Early Parkinson's Disease Detection with Tabular Biomedical Data [0.0]
Early and accurate detection of Parkinson's disease (PD) remains a critical challenge in medical diagnostics.<n>Traditional machine learning (ML) models, though widely applied to PD detection, often rely on extensive feature engineering and struggle to capture complex feature interactions.<n>We present a comparative evaluation of four classification models: Multi-Layer Perceptron (MLP), Gradient Boosting, TabNet, and SAINT.
arXiv Detail & Related papers (2026-02-08T12:03:02Z) - Topology-aware Pathological Consistency Matching for Weakly-Paired IHC Virtual Staining [37.3879490506952]
We propose a novel topology-aware framework for H&E-to-IHC virtual staining.<n>Specifically, we introduce a Topology-aware Consistency Matching mechanism that employs graph contrastive learning and topological perturbations.<n>Our method outperforms state-of-the-art approaches, achieving superior generation quality with higher clinical relevance.
arXiv Detail & Related papers (2026-01-06T08:28:38Z) - IMILIA: interpretable multiple instance learning for inflammation prediction in IBD from H&E whole slide images [2.5182612992285844]
We introduce IMILIA, an end-to-end framework for prediction of inflammation presence in IBD digitized slides stained with hematoxylin and eosin (H&E)<n> IMILIA is composed of an inflammation prediction module, and an interpretability module, divided in two blocks: HistoPLUS, for cell instance detection, and EpiSeg, for epithelium segmentation.<n>The interpretability module yields biologically consistent insights: tiles with higher predicted scores show increased densities of immune cells, whereas lower-scored tiles predominantly contain normal epithelial cells.
arXiv Detail & Related papers (2025-12-15T15:36:09Z) - LGE-Guided Cross-Modality Contrastive Learning for Gadolinium-Free Cardiomyopathy Screening in Cine CMR [51.11296719862485]
We propose a Contrastive Learning and Cross-Modal alignment framework for gadolinium-free cardiomyopathy screening using cine CMR sequences.<n>By aligning the latent spaces of cine CMR and Late Gadolinium Enhancement (LGE) sequences, our model encodes fibrosis-specific pathology into cine CMR embeddings.
arXiv Detail & Related papers (2025-08-23T07:21:23Z) - From Pixels to Pathology: Restoration Diffusion for Diagnostic-Consistent Virtual IHC [37.284994932355865]
We introduce Star-Diff, a structure-aware staining restoration diffusion model that reformulates virtual staining as an image restoration task.<n>By combining residual and noise-based generation pathways, Star-Diff maintains tissue structure while modeling realistic biomarker variability.<n> Experiments on the BCI dataset demonstrate that Star-Diff achieves state-of-the-art (SOTA) performance in both visual fidelity and diagnostic relevance.
arXiv Detail & Related papers (2025-08-04T15:36:58Z) - Cross-Modality Learning for Predicting IHC Biomarkers from H&E-Stained Whole-Slide Images [4.650292435891902]
HistoStainAlign predicts IHC staining patterns directly from H&E whole-slide images.<n>HistoStainAlign achieved weighted F1 scores of 0.735 [95% Confidence Interval (CI): 0.670-0.799], 0.830 [95% CI: 0.772-0.886], and 0.723 [95% CI: 0.607-0.836], respectively for these three IHC stains.
arXiv Detail & Related papers (2025-06-18T20:01:14Z) - MedHELM: Holistic Evaluation of Large Language Models for Medical Tasks [47.486705282473984]
Large language models (LLMs) achieve near-perfect scores on medical exams.<n>These evaluations inadequately reflect complexity and diversity of real-world clinical practice.<n>We introduce MedHELM, an evaluation framework for assessing LLM performance for medical tasks.
arXiv Detail & Related papers (2025-05-26T22:55:49Z) - Predicting Length of Stay in Neurological ICU Patients Using Classical Machine Learning and Neural Network Models: A Benchmark Study on MIMIC-IV [49.1574468325115]
This study explores multiple ML approaches for predicting LOS in ICU specifically for the patients with neurological diseases based on the MIMIC-IV dataset.<n>The evaluated models include classic ML algorithms (K-Nearest Neighbors, Random Forest, XGBoost and CatBoost) and Neural Networks (LSTM, BERT and Temporal Fusion Transformer)
arXiv Detail & Related papers (2025-05-23T14:06:42Z) - Deep Learning for Classification of Inflammatory Bowel Disease Activity in Whole Slide Images of Colonic Histopathology [3.311734750818073]
We developed a deep learning model to classify activity grades in hematoxylin and eosin-stained whole slide images.
We utilized 2,077 WSIs from 636 patients treated at Dartmouth-Hitchcock Medical Center in 2018 and 2019.
arXiv Detail & Related papers (2024-10-25T17:00:31Z) - SDoH-GPT: Using Large Language Models to Extract Social Determinants of Health (SDoH) [43.79125048893811]
We introduce SDoH-GPT, a simple and effective few-shot Large Language Model (LLM) method to extract social determinants of health from medical notes.
It achieved tenfold and twentyfold reductions in time and cost respectively, and superior consistency with human annotators measured by Cohen's kappa of up to 0.92.
This study highlights the potential of leveraging LLMs to revolutionize medical note classification, demonstrating their capability to achieve highly accurate classifications with significantly reduced time and cost.
arXiv Detail & Related papers (2024-07-24T09:57:51Z) - AXIAL: Attention-based eXplainability for Interpretable Alzheimer's Localized Diagnosis using 2D CNNs on 3D MRI brain scans [43.06293430764841]
This study presents an innovative method for Alzheimer's disease diagnosis using 3D MRI designed to enhance the explainability of model decisions.
Our approach adopts a soft attention mechanism, enabling 2D CNNs to extract volumetric representations.
With voxel-level precision, our method identified which specific areas are being paid attention to, identifying these predominant brain regions.
arXiv Detail & Related papers (2024-07-02T16:44:00Z) - CIMIL-CRC: a clinically-informed multiple instance learning framework for patient-level colorectal cancer molecular subtypes classification from H\&E stained images [42.771819949806655]
We introduce CIMIL-CRC', a framework that solves the MSI/MSS MIL problem by efficiently combining a pre-trained feature extraction model with principal component analysis (PCA) to aggregate information from all patches.
We assessed our CIMIL-CRC method using the average area under the curve (AUC) from a 5-fold cross-validation experimental setup for model development on the TCGA-CRC-DX cohort.
arXiv Detail & Related papers (2024-01-29T12:56:11Z) - A Fully Automated Pipeline Using Swin Transformers for Deep
Learning-Based Blood Segmentation on Head CT Scans After Aneurysmal
Subarachnoid Hemorrhage [0.0]
We develop and validate an artificial intelligence-driven, fully automated blood segmentation tool for spontaneous subarachnoid hemorrhage (SAH) patients.
We retrospectively analyzed NCCT scans from patients with confirmed aneurysmal subarachnoid hemorrhage (aSAH) utilizing the Swin UNETR for segmentation.
arXiv Detail & Related papers (2023-12-29T10:57:51Z) - Learning to diagnose cirrhosis from radiological and histological labels
with joint self and weakly-supervised pretraining strategies [62.840338941861134]
We propose to leverage transfer learning from large datasets annotated by radiologists, to predict the histological score available on a small annex dataset.
We compare different pretraining methods, namely weakly-supervised and self-supervised ones, to improve the prediction of the cirrhosis.
This method outperforms the baseline classification of the METAVIR score, reaching an AUC of 0.84 and a balanced accuracy of 0.75.
arXiv Detail & Related papers (2023-02-16T17:06:23Z) - Lung Cancer Lesion Detection in Histopathology Images Using Graph-Based
Sparse PCA Network [93.22587316229954]
We propose a graph-based sparse principal component analysis (GS-PCA) network, for automated detection of cancerous lesions on histological lung slides stained by hematoxylin and eosin (H&E)
We evaluate the performance of the proposed algorithm on H&E slides obtained from an SVM K-rasG12D lung cancer mouse model using precision/recall rates, F-score, Tanimoto coefficient, and area under the curve (AUC) of the receiver operator characteristic (ROC)
arXiv Detail & Related papers (2021-10-27T19:28:36Z) - A Pathology Deep Learning System Capable of Triage of Melanoma Specimens
Utilizing Dermatopathologist Consensus as Ground Truth [5.46895714413677]
We present a pathology deep learning system (PDLS) that performs hierarchical classification of digitized whole slide image (WSI) specimens.
We trained the system on 7,685 images from a single lab, including the the largest set of triple-concordant melanocytic specimens compiled to date.
We demonstrate that the PDLS is capable of automatically sorting and triaging skin specimens with high sensitivity to Melanocytic Suspect cases.
arXiv Detail & Related papers (2021-09-15T19:48:51Z) - DeepSMILE: Contrastive self-supervised pre-training benefits MSI and HRD
classification directly from H&E whole-slide images in colorectal and breast
cancer [22.46523830554047]
We propose a Deep learning-based weak label learning method for analyzing whole slide images (WSIs) of Hematoxylin and Eosin stained tumor tissue.
We apply DeepSMILE to the task of Homologous recombination deficiency (HRD) and microsatellite instability (MSI) prediction.
arXiv Detail & Related papers (2021-07-20T11:00:16Z) - Performance of Dual-Augmented Lagrangian Method and Common Spatial
Patterns applied in classification of Motor-Imagery BCI [68.8204255655161]
Motor-imagery based brain-computer interfaces (MI-BCI) have the potential to become ground-breaking technologies for neurorehabilitation.
Due to the noisy nature of the used EEG signal, reliable BCI systems require specialized procedures for features optimization and extraction.
arXiv Detail & Related papers (2020-10-13T20:50:13Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.