Scaling Representation Learning from Ubiquitous ECG with State-Space
Models
- URL: http://arxiv.org/abs/2309.15292v1
- Date: Tue, 26 Sep 2023 22:08:19 GMT
- Title: Scaling Representation Learning from Ubiquitous ECG with State-Space
Models
- Authors: Kleanthis Avramidis, Dominika Kunc, Bartosz Perz, Kranti Adsul,
Tiantian Feng, Przemys{\l}aw Kazienko, Stanis{\l}aw Saganowski, Shrikanth
Narayanan
- Abstract summary: We introduce textbfWildECG, a pre-trained state-space model for representation learning from ECG signals.
We train this model in a self-supervised manner with 275,000 10s ECG recordings collected in the wild and evaluate it on a range of downstream tasks.
- Score: 28.776392386988043
- License: http://creativecommons.org/licenses/by-nc-sa/4.0/
- Abstract: Ubiquitous sensing from wearable devices in the wild holds promise for
enhancing human well-being, from diagnosing clinical conditions and measuring
stress to building adaptive health promoting scaffolds. But the large volumes
of data therein across heterogeneous contexts pose challenges for conventional
supervised learning approaches. Representation Learning from biological signals
is an emerging realm catalyzed by the recent advances in computational modeling
and the abundance of publicly shared databases. The electrocardiogram (ECG) is
the primary researched modality in this context, with applications in health
monitoring, stress and affect estimation. Yet, most studies are limited by
small-scale controlled data collection and over-parameterized architecture
choices. We introduce \textbf{WildECG}, a pre-trained state-space model for
representation learning from ECG signals. We train this model in a
self-supervised manner with 275,000 10s ECG recordings collected in the wild
and evaluate it on a range of downstream tasks. The proposed model is a robust
backbone for ECG analysis, providing competitive performance on most of the
tasks considered, while demonstrating efficacy in low-resource regimes. The
code and pre-trained weights are shared publicly at
https://github.com/klean2050/tiles_ecg_model.
Related papers
- Self-Trained Model for ECG Complex Delineation [0.0]
Electrocardiogram (ECG) delineation plays a crucial role in assisting cardiologists with accurate diagnoses.
We introduce a dataset for ECG delineation and propose a novel self-trained method aimed at leveraging a vast amount of unlabeled ECG data.
Our approach involves the pseudolabeling of unlabeled data using a neural network trained on our dataset. Subsequently, we train the model on the newly labeled samples to enhance the quality of delineation.
arXiv Detail & Related papers (2024-06-04T18:54:10Z) - Towards a clinically accessible radiology foundation model: open-access and lightweight, with automated evaluation [113.5002649181103]
Training open-source small multimodal models (SMMs) to bridge competency gaps for unmet clinical needs in radiology.
For training, we assemble a large dataset of over 697 thousand radiology image-text pairs.
For evaluation, we propose CheXprompt, a GPT-4-based metric for factuality evaluation, and demonstrate its parity with expert evaluation.
The inference of LlaVA-Rad is fast and can be performed on a single V100 GPU in private settings, offering a promising state-of-the-art tool for real-world clinical applications.
arXiv Detail & Related papers (2024-03-12T18:12:02Z) - Large-scale Training of Foundation Models for Wearable Biosignals [1.8291790356553643]
Tracking biosignals is crucial for monitoring wellness and preempting the development of severe medical conditions.
Despite wearable and existing digital biomarkers, the absence of data with labels hinders the development of new biomarkers.
We train foundation models for two common biosignals: photo movement and electrocardiogram.
arXiv Detail & Related papers (2023-12-08T23:44:34Z) - Unsupervised Pre-Training Using Masked Autoencoders for ECG Analysis [4.3312979375047025]
This paper proposes an unsupervised pre-training technique based on masked autoencoder (MAE) for electrocardiogram (ECG) signals.
In addition, we propose a task-specific fine-tuning to form a complete framework for ECG analysis.
The framework is high-level, universal, and not individually adapted to specific model architectures or tasks.
arXiv Detail & Related papers (2023-10-17T11:19:51Z) - Learnable Weight Initialization for Volumetric Medical Image Segmentation [66.3030435676252]
We propose a learnable weight-based hybrid medical image segmentation approach.
Our approach is easy to integrate into any hybrid model and requires no external training data.
Experiments on multi-organ and lung cancer segmentation tasks demonstrate the effectiveness of our approach.
arXiv Detail & Related papers (2023-06-15T17:55:05Z) - Generalizing electrocardiogram delineation: training convolutional
neural networks with synthetic data augmentation [63.51064808536065]
Existing databases for ECG delineation are small, being insufficient in size and in the array of pathological conditions they represent.
This article delves has two main contributions. First, a pseudo-synthetic data generation algorithm was developed, based in probabilistically composing ECG traces given "pools" of fundamental segments, as cropped from the original databases, and a set of rules for their arrangement into coherent synthetic traces.
Second, two novel segmentation-based loss functions have been developed, which attempt at enforcing the prediction of an exact number of independent structures and at producing closer segmentation boundaries by focusing on a reduced number of samples.
arXiv Detail & Related papers (2021-11-25T10:11:41Z) - Unifying Heterogenous Electronic Health Records Systems via Text-Based
Code Embedding [7.3394352452936085]
We introduce DescEmb, a code-agnostic description-based representation learning framework for predictive modeling on EHR.
We tested our model's capacity on various experiments including prediction tasks, transfer learning and pooled learning.
arXiv Detail & Related papers (2021-08-08T12:47:42Z) - Learning Generalizable Physiological Representations from Large-scale
Wearable Data [12.863826659440026]
We present a novel self-supervised representation learning method using activity and heart rate (HR) signals without semantic labels.
We show that the resulting embeddings can generalize in various downstream tasks through transfer learning with linear classifiers.
Overall, we propose the first multimodal self-supervised method for behavioral and physiological data with implications for large-scale health and lifestyle monitoring.
arXiv Detail & Related papers (2020-11-09T17:56:03Z) - Uncovering the structure of clinical EEG signals with self-supervised
learning [64.4754948595556]
Supervised learning paradigms are often limited by the amount of labeled data that is available.
This phenomenon is particularly problematic in clinically-relevant data, such as electroencephalography (EEG)
By extracting information from unlabeled data, it might be possible to reach competitive performance with deep neural networks.
arXiv Detail & Related papers (2020-07-31T14:34:47Z) - ECG-DelNet: Delineation of Ambulatory Electrocardiograms with Mixed
Quality Labeling Using Neural Networks [69.25956542388653]
Deep learning (DL) algorithms are gaining weight in academic and industrial settings.
We demonstrate DL can be successfully applied to low interpretative tasks by embedding ECG detection and delineation onto a segmentation framework.
The model was trained using PhysioNet's QT database, comprised of 105 ambulatory ECG recordings.
arXiv Detail & Related papers (2020-05-11T16:29:12Z) - Opportunities and Challenges of Deep Learning Methods for
Electrocardiogram Data: A Systematic Review [62.490310870300746]
The electrocardiogram (ECG) is one of the most commonly used diagnostic tools in medicine and healthcare.
Deep learning methods have achieved promising results on predictive healthcare tasks using ECG signals.
This paper presents a systematic review of deep learning methods for ECG data from both modeling and application perspectives.
arXiv Detail & Related papers (2019-12-28T02:44:29Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.