CAMEL2: Enhancing weakly supervised learning for histopathology images by incorporating the significance ratio
- URL: http://arxiv.org/abs/2310.05394v2
- Date: Sat, 25 May 2024 13:24:17 GMT
- Title: CAMEL2: Enhancing weakly supervised learning for histopathology images by incorporating the significance ratio
- Abstract summary: Histopathology image analysis plays a crucial role in cancer diagnosis.
weakly supervised learning methods, which only require coarse-grained labels at the image level, can significantly reduce labelling efforts.
We present CAMEL2, which achieves comparable results to those of fully supervised baselines in pixel-level segmentation.
- Score: 6.1718120147795466
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Histopathology image analysis plays a crucial role in cancer diagnosis. However, training a clinically applicable segmentation algorithm requires pathologists to engage in labour-intensive labelling. In contrast, weakly supervised learning methods, which only require coarse-grained labels at the image level, can significantly reduce the labeling efforts. Unfortunately, while these methods perform reasonably well in slide-level prediction, their ability to locate cancerous regions, which is essential for many clinical applications, remains unsatisfactory. Previously, we proposed CAMEL, which achieves comparable results to those of fully supervised baselines in pixel-level segmentation. However, CAMEL requires 1,280x1,280 image-level binary annotations for positive WSIs. Here, we present CAMEL2, by introducing a threshold of the cancerous ratio for positive bags, it allows us to better utilize the information, consequently enabling us to scale up the image-level setting from 1,280x1,280 to 5,120x5,120 while maintaining the accuracy. Our results with various datasets, demonstrate that CAMEL2, with the help of 5,120x5,120 image-level binary annotations, which are easy to annotate, achieves comparable performance to that of a fully supervised baseline in both instance- and slide-level classifications.
Related papers
- Benchmarking Class Activation Map Methods for Explainable Brain Hemorrhage Classification on Hemorica Dataset [0.0]
This study investigates brain hemorrhage diagnosis with a focus on explainability through Class Activation Mapping (CAM) techniques.<n>A pipeline was developed to extract pixellevel segmentation and detection annotations from classification models using nine state-of-the-art CAM algorithms.
arXiv Detail & Related papers (2025-08-25T06:16:32Z) - Affinity-Graph-Guided Contractive Learning for Pretext-Free Medical Image Segmentation with Minimal Annotation [55.325956390997]
This paper proposes an affinity-graph-guided semi-supervised contrastive learning framework (Semi-AGCL) for medical image segmentation.
The framework first designs an average-patch-entropy-driven inter-patch sampling method, which can provide a robust initial feature space.
With merely 10% of the complete annotation set, our model approaches the accuracy of the fully annotated baseline, manifesting a marginal deviation of only 2.52%.
arXiv Detail & Related papers (2024-10-14T10:44:47Z) - A Classification-Based Adaptive Segmentation Pipeline: Feasibility Study Using Polycystic Liver Disease and Metastases from Colorectal Cancer CT Images [0.261201916989931]
The purpose of this study is to explore the feasibility of building a workflow to efficiently trained segmentation models.
By implementing a deep learning model to automatically classify the images and route them appropriate segmentation models, we hope our workflow can segment the images with different pathology accurately.
arXiv Detail & Related papers (2024-05-02T18:05:37Z) - Semi- and Weakly-Supervised Learning for Mammogram Mass Segmentation with Limited Annotations [49.33388736227072]
We propose a semi- and weakly-supervised learning framework for mass segmentation.
We use limited strongly-labeled samples and sufficient weakly-labeled samples to achieve satisfactory performance.
Experiments on CBIS-DDSM and INbreast datasets demonstrate the effectiveness of our method.
arXiv Detail & Related papers (2024-03-14T12:05:25Z) - Weakly Supervised Intracranial Hemorrhage Segmentation using Head-Wise
Gradient-Infused Self-Attention Maps from a Swin Transformer in Categorical
Learning [0.6269243524465492]
Intracranial hemorrhage (ICH) is a life-threatening medical emergency that requires timely diagnosis and accurate treatment.
Deep learning techniques have emerged as the leading approach for medical image analysis and processing.
We introduce a novel weakly supervised method for ICH segmentation, utilizing a Swin transformer trained on an ICH classification task with categorical labels.
arXiv Detail & Related papers (2023-04-11T00:17:34Z) - Active Learning Enhances Classification of Histopathology Whole Slide
Images with Attention-based Multiple Instance Learning [48.02011627390706]
We train an attention-based MIL and calculate a confidence metric for every image in the dataset to select the most uncertain WSIs for expert annotation.
With a novel attention guiding loss, this leads to an accuracy boost of the trained models with few regions annotated for each class.
It may in the future serve as an important contribution to train MIL models in the clinically relevant context of cancer classification in histopathology.
arXiv Detail & Related papers (2023-03-02T15:18:58Z) - Multi-Scale Attention-based Multiple Instance Learning for
Classification of Multi-Gigapixel Histology Images [0.0]
We propose a deep learning pipeline for classification in histology images.
We attempt to predict the latent membrane protein 1 (LMP1) status of nasopharyngeal carcinoma (NPC) based on haematoxylin and eosin-stain (H&E) histology images.
arXiv Detail & Related papers (2022-09-07T10:14:02Z) - Mixed-UNet: Refined Class Activation Mapping for Weakly-Supervised
Semantic Segmentation with Multi-scale Inference [28.409679398886304]
We develop a novel model named Mixed-UNet, which has two parallel branches in the decoding phase.
We evaluate the designed Mixed-UNet against several prevalent deep learning-based segmentation approaches on our dataset collected from the local hospital and public datasets.
arXiv Detail & Related papers (2022-05-06T08:37:02Z) - WSSS4LUAD: Grand Challenge on Weakly-supervised Tissue Semantic
Segmentation for Lung Adenocarcinoma [51.50991881342181]
This challenge includes 10,091 patch-level annotations and over 130 million labeled pixels.
First place team achieved mIoU of 0.8413 (tumor: 0.8389, stroma: 0.7931, normal: 0.8919)
arXiv Detail & Related papers (2022-04-13T15:27:05Z) - Mixed Supervision Learning for Whole Slide Image Classification [88.31842052998319]
We propose a mixed supervision learning framework for super high-resolution images.
During the patch training stage, this framework can make use of coarse image-level labels to refine self-supervised learning.
A comprehensive strategy is proposed to suppress pixel-level false positives and false negatives.
arXiv Detail & Related papers (2021-07-02T09:46:06Z) - Towards Unbiased COVID-19 Lesion Localisation and Segmentation via
Weakly Supervised Learning [66.36706284671291]
We propose a data-driven framework supervised by only image-level labels to support unbiased lesion localisation.
The framework can explicitly separate potential lesions from original images, with the help of a generative adversarial network and a lesion-specific decoder.
arXiv Detail & Related papers (2021-03-01T06:05:49Z) - Representation Learning of Histopathology Images using Graph Neural
Networks [12.427740549056288]
We propose a two-stage framework for WSI representation learning.
We sample relevant patches using a color-based method and use graph neural networks to learn relations among sampled patches to aggregate the image information into a single vector representation.
We demonstrate the performance of our approach for discriminating two sub-types of lung cancers, Lung Adenocarcinoma (LUAD) & Lung Squamous Cell Carcinoma (LUSC)
arXiv Detail & Related papers (2020-04-16T00:09:20Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.