Cross-dataset domain adaptation for the classification COVID-19 using
chest computed tomography images
- URL: http://arxiv.org/abs/2311.08524v1
- Date: Tue, 14 Nov 2023 20:36:34 GMT
- Title: Cross-dataset domain adaptation for the classification COVID-19 using
chest computed tomography images
- Authors: Ridha Ouni and Haikel Alhichri
- Abstract summary: COVID19-DANet is based on pre-trained CNN backbone for feature extraction.
It is tested under four cross-dataset scenarios using the SARS-CoV-2-CT and COVID19-CT datasets.
- Score: 0.6798775532273751
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Detecting COVID-19 patients using Computed Tomography (CT) images of the
lungs is an active area of research. Datasets of CT images from COVID-19
patients are becoming available. Deep learning (DL) solutions and in particular
Convolutional Neural Networks (CNN) have achieved impressive results for the
classification of COVID-19 CT images, but only when the training and testing
take place within the same dataset. Work on the cross-dataset problem is still
limited and the achieved results are low. Our work tackles the cross-dataset
problem through a Domain Adaptation (DA) technique with deep learning. Our
proposed solution, COVID19-DANet, is based on pre-trained CNN backbone for
feature extraction. For this task, we select the pre-trained Efficientnet-B3
CNN because it has achieved impressive classification accuracy in previous
work. The backbone CNN is followed by a prototypical layer which is a concept
borrowed from prototypical networks in few-shot learning (FSL). It computes a
cosine distance between given samples and the class prototypes and then
converts them to class probabilities using the Softmax function. To train the
COVID19-DANet model, we propose a combined loss function that is composed of
the standard cross-entropy loss for class discrimination and another entropy
loss computed over the unlabelled target set only. This so-called unlabelled
target entropy loss is minimized and maximized in an alternative fashion, to
reach the two objectives of class discrimination and domain invariance.
COVID19-DANet is tested under four cross-dataset scenarios using the
SARS-CoV-2-CT and COVID19-CT datasets and has achieved encouraging results
compared to recent work in the literature.
Related papers
- An Ensemble Deep Learning Approach for COVID-19 Severity Prediction
Using Chest CT Scans [8.512389316218943]
We present our findings on COVID-19 severity prediction from chest CT scans.
We developed an ensemble deep learning based model that incorporates multiple neural networks to improve predictions.
arXiv Detail & Related papers (2023-05-17T10:43:15Z) - Prompt Tuning for Parameter-efficient Medical Image Segmentation [79.09285179181225]
We propose and investigate several contributions to achieve a parameter-efficient but effective adaptation for semantic segmentation on two medical imaging datasets.
We pre-train this architecture with a dedicated dense self-supervision scheme based on assignments to online generated prototypes.
We demonstrate that the resulting neural network model is able to attenuate the gap between fully fine-tuned and parameter-efficiently adapted models.
arXiv Detail & Related papers (2022-11-16T21:55:05Z) - Dual Multi-scale Mean Teacher Network for Semi-supervised Infection
Segmentation in Chest CT Volume for COVID-19 [76.51091445670596]
Automated detecting lung infections from computed tomography (CT) data plays an important role for combating COVID-19.
Most current COVID-19 infection segmentation methods mainly relied on 2D CT images, which lack 3D sequential constraint.
Existing 3D CT segmentation methods focus on single-scale representations, which do not achieve the multiple level receptive field sizes on 3D volume.
arXiv Detail & Related papers (2022-11-10T13:11:21Z) - An Efficient End-to-End Deep Neural Network for Interstitial Lung
Disease Recognition and Classification [0.5424799109837065]
This paper introduces an end-to-end deep convolution neural network (CNN) for classifying ILDs patterns.
The proposed model comprises four convolutional layers with different kernel sizes and Rectified Linear Unit (ReLU) activation function.
A dataset consisting of 21328 image patches of 128 CT scans with five classes is taken to train and assess the proposed model.
arXiv Detail & Related papers (2022-04-21T06:36:10Z) - CNN Filter Learning from Drawn Markers for the Detection of Suggestive
Signs of COVID-19 in CT Images [58.720142291102135]
We propose a method that does not require either large annotated datasets or backpropagation to estimate the filters of a convolutional neural network (CNN)
For a few CT images, the user draws markers at representative normal and abnormal regions.
The method generates a feature extractor composed of a sequence of convolutional layers, whose kernels are specialized in enhancing regions similar to the marked ones.
arXiv Detail & Related papers (2021-11-16T15:03:42Z) - Data Augmentation and CNN Classification For Automatic COVID-19
Diagnosis From CT-Scan Images On Small Dataset [0.0]
We present an automatic COVID1-19 diagnosis framework from lung CT images.
We propose a unique and effective data augmentation method using multiple Hounsfield Unit (HU) normalization windows.
On the training/validation dataset, we achieve a patient classification accuracy of 93.39%.
arXiv Detail & Related papers (2021-08-16T15:23:00Z) - Evolving Deep Convolutional Neural Network by Hybrid Sine-Cosine and
Extreme Learning Machine for Real-time COVID19 Diagnosis from X-Ray Images [0.5249805590164902]
Deep Convolutional Networks (CNNs) can be considered as applicable tools to diagnose COVID19 positive cases.
This paper proposes using the Extreme Learning Machine (ELM) instead of the last fully connected layer to address this deficiency.
The proposed approach outperforms comparative benchmarks with a final accuracy of 98.83% on the COVID-Xray-5k dataset.
arXiv Detail & Related papers (2021-05-14T19:40:16Z) - Learning Invariant Representations across Domains and Tasks [81.30046935430791]
We propose a novel Task Adaptation Network (TAN) to solve this unsupervised task transfer problem.
In addition to learning transferable features via domain-adversarial training, we propose a novel task semantic adaptor that uses the learning-to-learn strategy to adapt the task semantics.
TAN significantly increases the recall and F1 score by 5.0% and 7.8% compared to recently strong baselines.
arXiv Detail & Related papers (2021-03-03T11:18:43Z) - An Uncertainty-Driven GCN Refinement Strategy for Organ Segmentation [53.425900196763756]
We propose a segmentation refinement method based on uncertainty analysis and graph convolutional networks.
We employ the uncertainty levels of the convolutional network in a particular input volume to formulate a semi-supervised graph learning problem.
We show that our method outperforms the state-of-the-art CRF refinement method by improving the dice score by 1% for the pancreas and 2% for spleen.
arXiv Detail & Related papers (2020-12-06T18:55:07Z) - Classification of COVID-19 in CT Scans using Multi-Source Transfer
Learning [91.3755431537592]
We propose the use of Multi-Source Transfer Learning to improve upon traditional Transfer Learning for the classification of COVID-19 from CT scans.
With our multi-source fine-tuning approach, our models outperformed baseline models fine-tuned with ImageNet.
Our best performing model was able to achieve an accuracy of 0.893 and a Recall score of 0.897, outperforming its baseline Recall score by 9.3%.
arXiv Detail & Related papers (2020-09-22T11:53:06Z) - COVID-ResNet: A Deep Learning Framework for Screening of COVID19 from
Radiographs [1.9798034349981157]
We present an accurate Convolutional Neural Network framework for differentiating COVID19 cases from other pneumonia cases.
This work presents a 3-step technique to fine-tune a pre-trained ResNet-50 architecture to improve model performance.
This model can help in the early screening of COVID19 cases and help reduce the burden on healthcare systems.
arXiv Detail & Related papers (2020-03-31T17:42:28Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.