Neural Fields for 3D Tracking of Anatomy and Surgical Instruments in Monocular Laparoscopic Video Clips
- URL: http://arxiv.org/abs/2403.19265v1
- Date: Thu, 28 Mar 2024 09:44:20 GMT
- Title: Neural Fields for 3D Tracking of Anatomy and Surgical Instruments in Monocular Laparoscopic Video Clips
- Authors: Beerend G. A. Gerats, Jelmer M. Wolterink, Seb P. Mol, Ivo A. M. J. Broeders,
- Abstract summary: We propose a method for joint tracking of all structures simultaneously on a single 2D monocular video clip.
Due to the small size of instruments, they generally cover a small part of the image only, resulting in decreased tracking accuracy.
We evaluate tracking on video clips laparoscopic cholecystectomies, where we find mean tracking accuracies of 92.4% for anatomical structures and 87.4% for instruments.
- Score: 1.339950379203994
- License: http://creativecommons.org/licenses/by-nc-sa/4.0/
- Abstract: Laparoscopic video tracking primarily focuses on two target types: surgical instruments and anatomy. The former could be used for skill assessment, while the latter is necessary for the projection of virtual overlays. Where instrument and anatomy tracking have often been considered two separate problems, in this paper, we propose a method for joint tracking of all structures simultaneously. Based on a single 2D monocular video clip, we train a neural field to represent a continuous spatiotemporal scene, used to create 3D tracks of all surfaces visible in at least one frame. Due to the small size of instruments, they generally cover a small part of the image only, resulting in decreased tracking accuracy. Therefore, we propose enhanced class weighting to improve the instrument tracks. We evaluate tracking on video clips from laparoscopic cholecystectomies, where we find mean tracking accuracies of 92.4% for anatomical structures and 87.4% for instruments. Additionally, we assess the quality of depth maps obtained from the method's scene reconstructions. We show that these pseudo-depths have comparable quality to a state-of-the-art pre-trained depth estimator. On laparoscopic videos in the SCARED dataset, the method predicts depth with an MAE of 2.9 mm and a relative error of 9.2%. These results show the feasibility of using neural fields for monocular 3D reconstruction of laparoscopic scenes.
Related papers
- Seamless Augmented Reality Integration in Arthroscopy: A Pipeline for Articular Reconstruction and Guidance [4.8046407905667206]
arthroscopy is a minimally invasive surgical procedure used to diagnose and treat joint problems.
The arthroscope's restricted field of view and lack of depth perception pose challenges in navigating complex articular structures.
We present a robust pipeline that incorporates simultaneous localization and mapping, depth estimation, and 3D Gaussian splatting.
Our solution offers AR assistance for articular notch measurement and annotation anchoring in a human-in-the-loop manner.
arXiv Detail & Related papers (2024-10-01T04:15:49Z) - SALVE: A 3D Reconstruction Benchmark of Wounds from Consumer-grade Videos [20.69257610322339]
This paper presents a study on 3D wound reconstruction from consumer-grade videos.
We introduce the SALVE dataset, comprising video recordings of realistic wound phantoms captured with different cameras.
We assess the accuracy and precision of state-of-the-art methods for 3D reconstruction, ranging from traditional photogrammetry pipelines to advanced neural rendering approaches.
arXiv Detail & Related papers (2024-07-29T02:34:51Z) - High-fidelity Endoscopic Image Synthesis by Utilizing Depth-guided Neural Surfaces [18.948630080040576]
We introduce a novel method for colon section reconstruction by leveraging NeuS applied to endoscopic images, supplemented by a single frame of depth map.
Our approach demonstrates exceptional accuracy in completely rendering colon sections, even capturing unseen portions of the surface.
This breakthrough opens avenues for achieving stable and consistently scaled reconstructions, promising enhanced quality in cancer screening procedures and treatment interventions.
arXiv Detail & Related papers (2024-04-20T18:06:26Z) - FLex: Joint Pose and Dynamic Radiance Fields Optimization for Stereo Endoscopic Videos [79.50191812646125]
Reconstruction of endoscopic scenes is an important asset for various medical applications, from post-surgery analysis to educational training.
We adress the challenging setup of a moving endoscope within a highly dynamic environment of deforming tissue.
We propose an implicit scene separation into multiple overlapping 4D neural radiance fields (NeRFs) and a progressive optimization scheme jointly optimizing for reconstruction and camera poses from scratch.
This improves the ease-of-use and allows to scale reconstruction capabilities in time to process surgical videos of 5,000 frames and more; an improvement of more than ten times compared to the state of the art while being agnostic to external tracking information
arXiv Detail & Related papers (2024-03-18T19:13:02Z) - Multi-task learning with cross-task consistency for improved depth
estimation in colonoscopy [0.2995885872626565]
We develop a novel multi-task learning (MTL) approach with a shared encoder and two decoders, namely a surface normal decoder and a depth estimator.
We demonstrate an improvement of 14.17% on relative error and 10.4% on $delta_1$ accuracy over the most accurate baseline state-of-the-art BTS approach.
arXiv Detail & Related papers (2023-11-30T16:13:17Z) - Deep learning network to correct axial and coronal eye motion in 3D OCT
retinal imaging [65.47834983591957]
We propose deep learning based neural networks to correct axial and coronal motion artifacts in OCT based on a single scan.
The experimental result shows that the proposed method can effectively correct motion artifacts and achieve smaller error than other methods.
arXiv Detail & Related papers (2023-05-27T03:55:19Z) - Next-generation Surgical Navigation: Marker-less Multi-view 6DoF Pose
Estimation of Surgical Instruments [66.74633676595889]
We present a multi-camera capture setup consisting of static and head-mounted cameras.
Second, we publish a multi-view RGB-D video dataset of ex-vivo spine surgeries, captured in a surgical wet lab and a real operating theatre.
Third, we evaluate three state-of-the-art single-view and multi-view methods for the task of 6DoF pose estimation of surgical instruments.
arXiv Detail & Related papers (2023-05-05T13:42:19Z) - Geometry-Aware Attenuation Learning for Sparse-View CBCT Reconstruction [53.93674177236367]
Cone Beam Computed Tomography (CBCT) plays a vital role in clinical imaging.
Traditional methods typically require hundreds of 2D X-ray projections to reconstruct a high-quality 3D CBCT image.
This has led to a growing interest in sparse-view CBCT reconstruction to reduce radiation doses.
We introduce a novel geometry-aware encoder-decoder framework to solve this problem.
arXiv Detail & Related papers (2023-03-26T14:38:42Z) - A Temporal Learning Approach to Inpainting Endoscopic Specularities and
Its effect on Image Correspondence [13.25903945009516]
We propose using a temporal generative adversarial network (GAN) to inpaint the hidden anatomy under specularities.
This is achieved using in-vivo data of gastric endoscopy (Hyper-Kvasir) in a fully unsupervised manner.
We also assess the effect of our method in computer vision tasks that underpin 3D reconstruction and camera motion estimation.
arXiv Detail & Related papers (2022-03-31T13:14:00Z) - 4D Spatio-Temporal Convolutional Networks for Object Position Estimation
in OCT Volumes [69.62333053044712]
3D convolutional neural networks (CNNs) have shown promising performance for pose estimation of a marker object using single OCT images.
We extend 3D CNNs to 4D-temporal CNNs to evaluate the impact of additional temporal information for marker object tracking.
arXiv Detail & Related papers (2020-07-02T12:02:20Z) - Appearance Learning for Image-based Motion Estimation in Tomography [60.980769164955454]
In tomographic imaging, anatomical structures are reconstructed by applying a pseudo-inverse forward model to acquired signals.
Patient motion corrupts the geometry alignment in the reconstruction process resulting in motion artifacts.
We propose an appearance learning approach recognizing the structures of rigid motion independently from the scanned object.
arXiv Detail & Related papers (2020-06-18T09:49:11Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.