GLaD: Synergizing Molecular Graphs and Language Descriptors for Enhanced Power Conversion Efficiency Prediction in Organic Photovoltaic Devices
- URL: http://arxiv.org/abs/2405.14203v1
- Date: Thu, 23 May 2024 06:02:07 GMT
- Title: GLaD: Synergizing Molecular Graphs and Language Descriptors for Enhanced Power Conversion Efficiency Prediction in Organic Photovoltaic Devices
- Authors: Thao Nguyen, Tiara Torres-Flores, Changhyun Hwang, Carl Edwards, Ying Diao, Heng Ji,
- Abstract summary: This paper presents a novel approach for predicting Power Conversion Efficiency (PCE) of Organic Photovoltaic (OPV) devices, called GLaD: synergizing molecular Graphs and Language Descriptors.
We collect a dataset consisting of 500 pairs of OPV donor and acceptor molecules along with their corresponding PCE values, which we utilize as the training data for our predictive model.
GLaD achieves precise predictions of PCE, thereby facilitating the synthesis of new OPV molecules with improved efficiency.
- Score: 43.511428925893675
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: This paper presents a novel approach for predicting Power Conversion Efficiency (PCE) of Organic Photovoltaic (OPV) devices, called GLaD: synergizing molecular Graphs and Language Descriptors for enhanced PCE prediction. Due to the lack of high-quality experimental data, we collect a dataset consisting of 500 pairs of OPV donor and acceptor molecules along with their corresponding PCE values, which we utilize as the training data for our predictive model. In this low-data regime, GLaD leverages properties learned from large language models (LLMs) pretrained on extensive scientific literature to enrich molecular structural representations, allowing for a multimodal representation of molecules. GLaD achieves precise predictions of PCE, thereby facilitating the synthesis of new OPV molecules with improved efficiency. Furthermore, GLaD showcases versatility, as it applies to a range of molecular property prediction tasks (BBBP, BACE, ClinTox, and SIDER), not limited to those concerning OPV materials. Especially, GLaD proves valuable for tasks in low-data regimes within the chemical space, as it enriches molecular representations by incorporating molecular property descriptions learned from large-scale pretraining. This capability is significant in real-world scientific endeavors like drug and material discovery, where access to comprehensive data is crucial for informed decision-making and efficient exploration of the chemical space.
Related papers
- FARM: Functional Group-Aware Representations for Small Molecules [55.281754551202326]
We introduce Functional Group-Aware Representations for Small Molecules (FARM)
FARM is a foundation model designed to bridge the gap between SMILES, natural language, and molecular graphs.
We rigorously evaluate FARM on the MoleculeNet dataset, where it achieves state-of-the-art performance on 10 out of 12 tasks.
arXiv Detail & Related papers (2024-10-02T23:04:58Z) - Advancements in Molecular Property Prediction: A Survey of Single and Multimodal Approaches [1.0446041735532203]
Molecular Property Prediction (MPP) plays a pivotal role across diverse domains, spanning drug discovery, material science, and environmental chemistry.
Recent years have witnessed remarkable strides in MPP, fueled by the exponential growth of chemical data and the evolution of artificial intelligence.
This article explores recent AI/based approaches in MPP, focusing on both single and multiple modality representation techniques.
arXiv Detail & Related papers (2024-08-18T12:49:52Z) - LLM and GNN are Complementary: Distilling LLM for Multimodal Graph Learning [26.980622926162933]
We present an innovative framework that utilizes multimodal molecular data to extract insights from Large Language Models (LLMs)
We introduce GALLON, a framework that synergizes the capabilities of LLMs and Graph Neural Networks (GNNs) by distilling multimodal knowledge into a unified Multilayer Perceptron (MLP)
arXiv Detail & Related papers (2024-06-03T06:33:51Z) - Data-Efficient Molecular Generation with Hierarchical Textual Inversion [48.816943690420224]
We introduce Hierarchical textual Inversion for Molecular generation (HI-Mol), a novel data-efficient molecular generation method.
HI-Mol is inspired by the importance of hierarchical information, e.g., both coarse- and fine-grained features, in understanding the molecule distribution.
Compared to the conventional textual inversion method in the image domain using a single-level token embedding, our multi-level token embeddings allow the model to effectively learn the underlying low-shot molecule distribution.
arXiv Detail & Related papers (2024-05-05T08:35:23Z) - Implicit Geometry and Interaction Embeddings Improve Few-Shot Molecular
Property Prediction [53.06671763877109]
We develop molecular embeddings that encode complex molecular characteristics to improve the performance of few-shot molecular property prediction.
Our approach leverages large amounts of synthetic data, namely the results of molecular docking calculations.
On multiple molecular property prediction benchmarks, training from the embedding space substantially improves Multi-Task, MAML, and Prototypical Network few-shot learning performance.
arXiv Detail & Related papers (2023-02-04T01:32:40Z) - KPGT: Knowledge-Guided Pre-training of Graph Transformer for Molecular
Property Prediction [13.55018269009361]
We introduce Knowledge-guided Pre-training of Graph Transformer (KPGT), a novel self-supervised learning framework for molecular graph representation learning.
KPGT can offer superior performance over current state-of-the-art methods on several molecular property prediction tasks.
arXiv Detail & Related papers (2022-06-02T08:22:14Z) - Do Large Scale Molecular Language Representations Capture Important
Structural Information? [31.76876206167457]
We present molecular embeddings obtained by training an efficient transformer encoder model, referred to as MoLFormer.
Experiments show that the learned molecular representation performs competitively, when compared to graph-based and fingerprint-based supervised learning baselines.
arXiv Detail & Related papers (2021-06-17T14:33:55Z) - BIGDML: Towards Exact Machine Learning Force Fields for Materials [55.944221055171276]
Machine-learning force fields (MLFF) should be accurate, computationally and data efficient, and applicable to molecules, materials, and interfaces thereof.
Here, we introduce the Bravais-Inspired Gradient-Domain Machine Learning approach and demonstrate its ability to construct reliable force fields using a training set with just 10-200 atoms.
arXiv Detail & Related papers (2021-06-08T10:14:57Z) - MEG: Generating Molecular Counterfactual Explanations for Deep Graph
Networks [11.291571222801027]
We present a novel approach to tackle explainability of deep graph networks in the context of molecule property prediction t asks.
We generate informative counterfactual explanations for a specific prediction under the form of (valid) compounds with high structural similarity and different predicted properties.
We discuss the results showing how the model can convey non-ML experts with key insights into the learning model focus in the neighbourhood of a molecule.
arXiv Detail & Related papers (2021-04-16T12:17:19Z) - Self-Supervised Graph Transformer on Large-Scale Molecular Data [73.3448373618865]
We propose a novel framework, GROVER, for molecular representation learning.
GROVER can learn rich structural and semantic information of molecules from enormous unlabelled molecular data.
We pre-train GROVER with 100 million parameters on 10 million unlabelled molecules -- the biggest GNN and the largest training dataset in molecular representation learning.
arXiv Detail & Related papers (2020-06-18T08:37:04Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.