BINDy -- Bayesian identification of nonlinear dynamics with reversible-jump Markov-chain Monte-Carlo
- URL: http://arxiv.org/abs/2408.08062v1
- Date: Thu, 15 Aug 2024 10:03:30 GMT
- Title: BINDy -- Bayesian identification of nonlinear dynamics with reversible-jump Markov-chain Monte-Carlo
- Authors: Max D. Champneys, Timothy J. Rogers,
- Abstract summary: Model parsimony is an important emphcognitive bias in data-driven modelling that aids interpretability and helps to prevent over-fitting.
Sparse identification of nonlinear dynamics (SINDy) methods are able to learn sparse representations of complex dynamics directly from data.
A novel Bayesian treatment of dictionary learning system identification, as an alternative to SINDy, is envisaged.
- Score: 0.0
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Model parsimony is an important \emph{cognitive bias} in data-driven modelling that aids interpretability and helps to prevent over-fitting. Sparse identification of nonlinear dynamics (SINDy) methods are able to learn sparse representations of complex dynamics directly from data, given a basis of library functions. In this work, a novel Bayesian treatment of dictionary learning system identification, as an alternative to SINDy, is envisaged. The proposed method -- Bayesian identification of nonlinear dynamics (BINDy) -- is distinct from previous approaches in that it targets the full joint posterior distribution over both the terms in the library and their parameterisation in the model. This formulation confers the advantage that an arbitrary prior may be placed over the model structure to produce models that are sparse in the model space rather than in parameter space. Because this posterior is defined over parameter vectors that can change in dimension, the inference cannot be performed by standard techniques. Instead, a Gibbs sampler based on reversible-jump Markov-chain Monte-Carlo is proposed. BINDy is shown to compare favourably to ensemble SINDy in three benchmark case-studies. In particular, it is seen that the proposed method is better able to assign high probability to correct model terms.
Related papers
- Diffusion posterior sampling for simulation-based inference in tall data settings [53.17563688225137]
Simulation-based inference ( SBI) is capable of approximating the posterior distribution that relates input parameters to a given observation.
In this work, we consider a tall data extension in which multiple observations are available to better infer the parameters of the model.
We compare our method to recently proposed competing approaches on various numerical experiments and demonstrate its superiority in terms of numerical stability and computational cost.
arXiv Detail & Related papers (2024-04-11T09:23:36Z) - Meaning Representations from Trajectories in Autoregressive Models [106.63181745054571]
We propose to extract meaning representations from autoregressive language models by considering the distribution of all possible trajectories extending an input text.
This strategy is prompt-free, does not require fine-tuning, and is applicable to any pre-trained autoregressive model.
We empirically show that the representations obtained from large models align well with human annotations, outperform other zero-shot and prompt-free methods on semantic similarity tasks, and can be used to solve more complex entailment and containment tasks that standard embeddings cannot handle.
arXiv Detail & Related papers (2023-10-23T04:35:58Z) - Bayesian Neural Network Inference via Implicit Models and the Posterior
Predictive Distribution [0.8122270502556371]
We propose a novel approach to perform approximate Bayesian inference in complex models such as Bayesian neural networks.
The approach is more scalable to large data than Markov Chain Monte Carlo.
We see this being useful in applications such as surrogate and physics-based models.
arXiv Detail & Related papers (2022-09-06T02:43:19Z) - An Interpretable and Efficient Infinite-Order Vector Autoregressive
Model for High-Dimensional Time Series [1.4939176102916187]
This paper proposes a novel sparse infinite-order VAR model for high-dimensional time series.
The temporal and cross-sectional structures of the VARMA-type dynamics captured by this model can be interpreted separately.
Greater statistical efficiency and interpretability can be achieved with little loss of temporal information.
arXiv Detail & Related papers (2022-09-02T17:14:24Z) - Parsimony-Enhanced Sparse Bayesian Learning for Robust Discovery of
Partial Differential Equations [5.584060970507507]
A Parsimony Enhanced Sparse Bayesian Learning (PeSBL) method is developed for discovering the governing Partial Differential Equations (PDEs) of nonlinear dynamical systems.
Results of numerical case studies indicate that the governing PDEs of many canonical dynamical systems can be correctly identified using the proposed PeSBL method.
arXiv Detail & Related papers (2021-07-08T00:56:11Z) - MINIMALIST: Mutual INformatIon Maximization for Amortized Likelihood
Inference from Sampled Trajectories [61.3299263929289]
Simulation-based inference enables learning the parameters of a model even when its likelihood cannot be computed in practice.
One class of methods uses data simulated with different parameters to infer an amortized estimator for the likelihood-to-evidence ratio.
We show that this approach can be formulated in terms of mutual information between model parameters and simulated data.
arXiv Detail & Related papers (2021-06-03T12:59:16Z) - Gaussian processes meet NeuralODEs: A Bayesian framework for learning
the dynamics of partially observed systems from scarce and noisy data [0.0]
This paper presents a machine learning framework (GP-NODE) for Bayesian systems identification from partial, noisy and irregular observations of nonlinear dynamical systems.
The proposed method takes advantage of recent developments in differentiable programming to propagate gradient information through ordinary differential equation solvers.
A series of numerical studies is presented to demonstrate the effectiveness of the proposed GP-NODE method including predator-prey systems, systems biology, and a 50-dimensional human motion dynamical system.
arXiv Detail & Related papers (2021-03-04T23:42:14Z) - Estimation of Switched Markov Polynomial NARX models [75.91002178647165]
We identify a class of models for hybrid dynamical systems characterized by nonlinear autoregressive (NARX) components.
The proposed approach is demonstrated on a SMNARX problem composed by three nonlinear sub-models with specific regressors.
arXiv Detail & Related papers (2020-09-29T15:00:47Z) - Identification of Probability weighted ARX models with arbitrary domains [75.91002178647165]
PieceWise Affine models guarantees universal approximation, local linearity and equivalence to other classes of hybrid system.
In this work, we focus on the identification of PieceWise Auto Regressive with eXogenous input models with arbitrary regions (NPWARX)
The architecture is conceived following the Mixture of Expert concept, developed within the machine learning field.
arXiv Detail & Related papers (2020-09-29T12:50:33Z) - Control as Hybrid Inference [62.997667081978825]
We present an implementation of CHI which naturally mediates the balance between iterative and amortised inference.
We verify the scalability of our algorithm on a continuous control benchmark, demonstrating that it outperforms strong model-free and model-based baselines.
arXiv Detail & Related papers (2020-07-11T19:44:09Z) - Bayesian differential programming for robust systems identification
under uncertainty [14.169588600819546]
This paper presents a machine learning framework for Bayesian systems identification from noisy, sparse and irregular observations of nonlinear dynamical systems.
The proposed method takes advantage of recent developments in differentiable programming to propagate gradient information through ordinary differential equation solvers.
The use of sparsity-promoting priors enables the discovery of interpretable and parsimonious representations for the underlying latent dynamics.
arXiv Detail & Related papers (2020-04-15T00:51:14Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.