ECGtizer: a fully automated digitizing and signal recovery pipeline for electrocardiograms
- URL: http://arxiv.org/abs/2412.12139v1
- Date: Mon, 09 Dec 2024 10:19:02 GMT
- Title: ECGtizer: a fully automated digitizing and signal recovery pipeline for electrocardiograms
- Authors: Alex Lence, Ahmad Fall, Samuel David Cohen, Federica Granese, Jean-Daniel Zucker, Joe-Elie Salem, Edi Prifti,
- Abstract summary: ECGtizer is an open-source tool designed to digitize paper ECGs and recover signals lost during storage.
It employs automated lead detection, three pixel-based signal extraction algorithms, and a deep learning-based signal reconstruction module.
- Score: 0.8480931990442769
- License:
- Abstract: Electrocardiograms (ECGs) are essential for diagnosing cardiac pathologies, yet traditional paper-based ECG storage poses significant challenges for automated analysis. This study introduces ECGtizer, an open-source, fully automated tool designed to digitize paper ECGs and recover signals lost during storage. ECGtizer facilitates automated analyses using modern AI methods. It employs automated lead detection, three pixel-based signal extraction algorithms, and a deep learning-based signal reconstruction module. We evaluated ECGtizer on two datasets: a real-life cohort from the COVID-19 pandemic (JOCOVID) and a publicly available dataset (PTB-XL). Performance was compared with two existing methods: the fully automated ECGminer and the semi-automated PaperECG, which requires human intervention. ECGtizer's performance was assessed in terms of signal recovery and the fidelity of clinically relevant feature measurement. Additionally, we tested these tools on a third dataset (GENEREPOL) for downstream AI tasks. Results show that ECGtizer outperforms existing tools, with its ECGtizerFrag algorithm delivering superior signal recovery. While PaperECG demonstrated better outcomes than ECGminer, it required human input. ECGtizer enhances the usability of historical ECG data and supports advanced AI-based diagnostic methods, making it a valuable addition to the field of AI in ECG analysis.
Related papers
- AnyECG: Foundational Models for Electrocardiogram Analysis [36.53693619144332]
Electrocardiogram (ECG) is highly sensitive in detecting acute heart attacks.
This paper introduces AnyECG, a foundational model designed to extract robust representations from any real-world ECG data.
Experimental results in anomaly detection, arrhythmia detection, corrupted lead generation, and ultra-long ECG signal analysis demonstrate that AnyECG learns common ECG knowledge from data and significantly outperforms cutting-edge methods in each respective task.
arXiv Detail & Related papers (2024-11-17T17:32:58Z) - Electrocardiogram Report Generation and Question Answering via Retrieval-Augmented Self-Supervised Modeling [19.513904491604794]
ECG-ReGen is a retrieval-based approach for ECG-to-text report generation and question answering.
By combining pre-training with dynamic retrieval and Large Language Model (LLM)-based refinement, ECG-ReGen effectively analyzes ECG data and answers related queries.
arXiv Detail & Related papers (2024-09-13T12:50:36Z) - ECGrecover: a Deep Learning Approach for Electrocardiogram Signal Completion [1.727597257312416]
We focus on two main scenarios: (i) reconstructing missing signal segments within an ECG lead and (ii) recovering entire leads from signal in another unique lead.
We propose ECGrecover, a neural network model trained on a novel composite objective function to address the reconstruction problem.
arXiv Detail & Related papers (2024-05-31T15:17:12Z) - MEIT: Multi-Modal Electrocardiogram Instruction Tuning on Large Language Models for Report Generation [41.324530807795256]
Electrocardiogram (ECG) is the primary non-invasive diagnostic tool for monitoring cardiac conditions.
Recent studies have concentrated on classifying cardiac conditions using ECG data but have overlooked ECG report generation.
We propose the Multimodal ECG Instruction Tuning (MEIT) framework, the first attempt to tackle ECG report generation with LLMs and multimodal instructions.
arXiv Detail & Related papers (2024-03-07T23:20:56Z) - DGSD: Dynamical Graph Self-Distillation for EEG-Based Auditory Spatial
Attention Detection [49.196182908826565]
Auditory Attention Detection (AAD) aims to detect target speaker from brain signals in a multi-speaker environment.
Current approaches primarily rely on traditional convolutional neural network designed for processing Euclidean data like images.
This paper proposes a dynamical graph self-distillation (DGSD) approach for AAD, which does not require speech stimuli as input.
arXiv Detail & Related papers (2023-09-07T13:43:46Z) - Masked Transformer for Electrocardiogram Classification [7.229662895786343]
Masked Transformer for ECG classification (MTECG) is a simple yet effective method which significantly outperforms recent state-of-the-art algorithms in ECG classification.
We construct the Fuwai dataset comprising 220,251 ECG recordings with a broad range of diagnoses, annotated by medical experts.
arXiv Detail & Related papers (2023-08-31T09:21:23Z) - PulseNet: Deep Learning ECG-signal classification using random
augmentation policy and continous wavelet transform for canines [46.09869227806991]
evaluating canine electrocardiograms (ECG) require skilled veterinarians.
Current availability of veterinary cardiologists for ECG interpretation and diagnostic support is limited.
We implement a deep convolutional neural network (CNN) approach for classifying canine electrocardiogram sequences as either normal or abnormal.
arXiv Detail & Related papers (2023-05-17T09:06:39Z) - Leveraging Statistical Shape Priors in GAN-based ECG Synthesis [3.3482093430607267]
We propose a novel approach for ECG signal generation using Generative Adversarial Networks (GANs) and statistical ECG data modeling.
Our approach leverages prior knowledge about ECG dynamics to synthesize realistic signals, addressing the complex dynamics of ECG signals.
Our results demonstrate that our approach, which models temporal and amplitude variations of ECG signals as 2-D shapes, generates more realistic signals compared to state-of-the-art GAN based generation baselines.
arXiv Detail & Related papers (2022-10-22T18:06:11Z) - Generalizing electrocardiogram delineation: training convolutional
neural networks with synthetic data augmentation [63.51064808536065]
Existing databases for ECG delineation are small, being insufficient in size and in the array of pathological conditions they represent.
This article delves has two main contributions. First, a pseudo-synthetic data generation algorithm was developed, based in probabilistically composing ECG traces given "pools" of fundamental segments, as cropped from the original databases, and a set of rules for their arrangement into coherent synthetic traces.
Second, two novel segmentation-based loss functions have been developed, which attempt at enforcing the prediction of an exact number of independent structures and at producing closer segmentation boundaries by focusing on a reduced number of samples.
arXiv Detail & Related papers (2021-11-25T10:11:41Z) - Lung Cancer Lesion Detection in Histopathology Images Using Graph-Based
Sparse PCA Network [93.22587316229954]
We propose a graph-based sparse principal component analysis (GS-PCA) network, for automated detection of cancerous lesions on histological lung slides stained by hematoxylin and eosin (H&E)
We evaluate the performance of the proposed algorithm on H&E slides obtained from an SVM K-rasG12D lung cancer mouse model using precision/recall rates, F-score, Tanimoto coefficient, and area under the curve (AUC) of the receiver operator characteristic (ROC)
arXiv Detail & Related papers (2021-10-27T19:28:36Z) - ECG-DelNet: Delineation of Ambulatory Electrocardiograms with Mixed
Quality Labeling Using Neural Networks [69.25956542388653]
Deep learning (DL) algorithms are gaining weight in academic and industrial settings.
We demonstrate DL can be successfully applied to low interpretative tasks by embedding ECG detection and delineation onto a segmentation framework.
The model was trained using PhysioNet's QT database, comprised of 105 ambulatory ECG recordings.
arXiv Detail & Related papers (2020-05-11T16:29:12Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.