Refined Causal Graph Structure Learning via Curvature for Brain Disease Classification
- URL: http://arxiv.org/abs/2506.15708v1
- Date: Fri, 30 May 2025 10:50:45 GMT
- Title: Refined Causal Graph Structure Learning via Curvature for Brain Disease Classification
- Authors: Falih Gozi Febrinanto, Adonia Simango, Chengpei Xu, Jingjing Zhou, Jiangang Ma, Sonika Tyagi, Feng Xia,
- Abstract summary: We propose a novel framework called CGB (Causal Graphs for Brains) for brain disease classification/detection.<n>CGB unveils causal relationships between ROIs that bring vital information to enhance brain disease classification performance.<n>Our experiments show that CGB outperforms state-of-the-art methods in classification tasks on brain disease datasets.
- Score: 5.135525907581342
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Graph neural networks (GNNs) have been developed to model the relationship between regions of interest (ROIs) in brains and have shown significant improvement in detecting brain diseases. However, most of these frameworks do not consider the intrinsic relationship of causality factor between brain ROIs, which is arguably more essential to observe cause and effect interaction between signals rather than typical correlation values. We propose a novel framework called CGB (Causal Graphs for Brains) for brain disease classification/detection, which models refined brain networks based on the causal discovery method, transfer entropy, and geometric curvature strategy. CGB unveils causal relationships between ROIs that bring vital information to enhance brain disease classification performance. Furthermore, CGB also performs a graph rewiring through a geometric curvature strategy to refine the generated causal graph to become more expressive and reduce potential information bottlenecks when GNNs model it. Our extensive experiments show that CGB outperforms state-of-the-art methods in classification tasks on brain disease datasets, as measured by average F1 scores.
Related papers
- Topology-Aware Graph Augmentation for Predicting Clinical Trajectories in Neurocognitive Disorders [27.280927277680515]
We propose a topology-aware graph augmentation (TGA) framework, comprising a pretext model to train a generalizable encoder and a task-specific model to perform downstream tasks.
Experiments on 1, 688 fMRI scans suggest that TGA outperforms several state-of-the-art methods.
arXiv Detail & Related papers (2024-10-31T19:37:20Z) - Graph Neural Networks for Brain Graph Learning: A Survey [53.74244221027981]
Graph neural networks (GNNs) have demonstrated a significant advantage in mining graph-structured data.
GNNs to learn brain graph representations for brain disorder analysis has recently gained increasing attention.
In this paper, we aim to bridge this gap by reviewing brain graph learning works that utilize GNNs.
arXiv Detail & Related papers (2024-06-01T02:47:39Z) - Interpretable Spatio-Temporal Embedding for Brain Structural-Effective Network with Ordinary Differential Equation [56.34634121544929]
In this study, we first construct the brain-effective network via the dynamic causal model.
We then introduce an interpretable graph learning framework termed Spatio-Temporal Embedding ODE (STE-ODE)
This framework incorporates specifically designed directed node embedding layers, aiming at capturing the dynamic interplay between structural and effective networks.
arXiv Detail & Related papers (2024-05-21T20:37:07Z) - Exploring General Intelligence via Gated Graph Transformer in Functional
Connectivity Studies [39.82681427764513]
Gated Graph Transformer (GGT) framework designed to predict cognitive metrics based on Functional Connectivity (FC)
Empirical validation on the Philadelphia Neurodevelopmental Cohort (PNC) underscores the superior predictive prowess of our model.
arXiv Detail & Related papers (2024-01-18T19:28:26Z) - Balanced Graph Structure Information for Brain Disease Detection [6.799894169098717]
We propose Bargrain, which models two graph structures: filtered correlation matrix and optimal sample graph using graph convolution networks (GCNs)
Based on our extensive experiment, Bargrain outperforms state-of-the-art methods in classification tasks on brain disease datasets, as measured by average F1 scores.
arXiv Detail & Related papers (2023-12-30T06:50:52Z) - Spatial-Temporal DAG Convolutional Networks for End-to-End Joint
Effective Connectivity Learning and Resting-State fMRI Classification [42.82118108887965]
Building comprehensive brain connectomes has proved to be fundamental importance in resting-state fMRI (rs-fMRI) analysis.
We model the brain network as a directed acyclic graph (DAG) to discover direct causal connections between brain regions.
We propose Spatial-Temporal DAG Convolutional Network (ST-DAGCN) to jointly infer effective connectivity and classify rs-fMRI time series.
arXiv Detail & Related papers (2023-12-16T04:31:51Z) - DBGDGM: Dynamic Brain Graph Deep Generative Model [63.23390833353625]
Graphs are a natural representation of brain activity derived from functional magnetic imaging (fMRI) data.
It is well known that clusters of anatomical brain regions, known as functional connectivity networks (FCNs), encode temporal relationships which can serve as useful biomarkers for understanding brain function and dysfunction.
Previous works, however, ignore the temporal dynamics of the brain and focus on static graphs.
We propose a dynamic brain graph deep generative model (DBGDGM) which simultaneously clusters brain regions into temporally evolving communities and learns dynamic unsupervised node embeddings.
arXiv Detail & Related papers (2023-01-26T20:45:30Z) - DynDepNet: Learning Time-Varying Dependency Structures from fMRI Data
via Dynamic Graph Structure Learning [58.94034282469377]
We propose DynDepNet, a novel method for learning the optimal time-varying dependency structure of fMRI data induced by downstream prediction tasks.
Experiments on real-world fMRI datasets, for the task of sex classification, demonstrate that DynDepNet achieves state-of-the-art results.
arXiv Detail & Related papers (2022-09-27T16:32:11Z) - Contrastive Brain Network Learning via Hierarchical Signed Graph Pooling
Model [64.29487107585665]
Graph representation learning techniques on brain functional networks can facilitate the discovery of novel biomarkers for clinical phenotypes and neurodegenerative diseases.
Here, we propose an interpretable hierarchical signed graph representation learning model to extract graph-level representations from brain functional networks.
In order to further improve the model performance, we also propose a new strategy to augment functional brain network data for contrastive learning.
arXiv Detail & Related papers (2022-07-14T20:03:52Z) - Functional2Structural: Cross-Modality Brain Networks Representation
Learning [55.24969686433101]
Graph mining on brain networks may facilitate the discovery of novel biomarkers for clinical phenotypes and neurodegenerative diseases.
We propose a novel graph learning framework, known as Deep Signed Brain Networks (DSBN), with a signed graph encoder.
We validate our framework on clinical phenotype and neurodegenerative disease prediction tasks using two independent, publicly available datasets.
arXiv Detail & Related papers (2022-05-06T03:45:36Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.