Prediction, Generation of WWTPs microbiome community structures and Clustering of WWTPs various feature attributes using DE-BP model, SiTime-GAN model and DPNG-EPMC ensemble clustering algorithm with modulation of microbial ecosystem health
- URL: http://arxiv.org/abs/2509.01526v1
- Date: Mon, 01 Sep 2025 15:00:50 GMT
- Title: Prediction, Generation of WWTPs microbiome community structures and Clustering of WWTPs various feature attributes using DE-BP model, SiTime-GAN model and DPNG-EPMC ensemble clustering algorithm with modulation of microbial ecosystem health
- Authors: Mingzhi Dai, Weiwei Cai, Xiang Feng, Huiqun Yu, Weibin Guo, Miao Guo,
- Abstract summary: We use the backpropagation neural network (BPNN), optimized through differential evolution (DE-BP), to predict the microbial composition of activated sludge (AS) systems.<n>We also introduce a novel clustering algorithm termed Directional Position Emotional Preference Migration Behavior Clustering (DPNG-MCEP)<n>Our results, obtained through predicting the microbial community and conducting analysis of WWTPs under various feature attributes, develop an understanding of the factors influencing AS communities.
- Score: 12.059919783074228
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Microbiomes not only underpin Earth's biogeochemical cycles but also play crucial roles in both engineered and natural ecosystems, such as the soil, wastewater treatment, and the human gut. However, microbiome engineering faces significant obstacles to surmount to deliver the desired improvements in microbiome control. Here, we use the backpropagation neural network (BPNN), optimized through differential evolution (DE-BP), to predict the microbial composition of activated sludge (AS) systems collected from wastewater treatment plants (WWTPs) located worldwide. Furthermore, we introduce a novel clustering algorithm termed Directional Position Nonlinear Emotional Preference Migration Behavior Clustering (DPNG-EPMC). This method is applied to conduct a clustering analysis of WWTPs across various feature attributes. Finally, we employ the Similar Time Generative Adversarial Networks (SiTime-GAN), to synthesize novel microbial compositions and feature attributes data. As a result, we demonstrate that the DE-BP model can provide superior predictions of the microbial composition. Additionally, we show that the DPNG-EPMC can be applied to the analysis of WWTPs under various feature attributes. Finally, we demonstrate that the SiTime-GAN model can generate valuable incremental synthetic data. Our results, obtained through predicting the microbial community and conducting analysis of WWTPs under various feature attributes, develop an understanding of the factors influencing AS communities.
Related papers
- BDPM: A Machine Learning-Based Feature Extractor for Parkinson's Disease Classification via Gut Microbiota Analysis [4.4187735824968835]
Parkinson's disease remains a major neurodegenerative disorder with high misdiagnosis rates.<n>Recent studies have demonstrated a strong association between gut microbiota and Parkinson's disease.<n>Deep learning models based ongut microbiota show potential for early prediction.
arXiv Detail & Related papers (2025-09-09T13:24:25Z) - EnviroPiNet: A Physics-Guided AI Model for Predicting Biofilter Performance [0.9895793818721335]
We present the first application of Buckingham Pi theory to modelling biofilter performance.<n>This dimensionality reduction technique identifies meaningful, dimensionless variables that enhance predictive accuracy.<n>We develop the Environmental Buckingham Pi Neural Network (EnviroPiNet), a physics-guided model benchmarked against traditional data-driven methods.
arXiv Detail & Related papers (2025-04-24T13:52:51Z) - Meta Flow Matching: Integrating Vector Fields on the Wasserstein Manifold [83.18058549195855]
We argue that multiple processes in natural sciences have to be represented as vector fields on the Wasserstein manifold of probability densities.<n>In particular, this is crucial for personalized medicine where the development of diseases and their respective treatment response depend on the microenvironment of cells specific to each patient.<n>We propose Meta Flow Matching (MFM), a practical approach to integrate along these vector fields on the Wasserstein manifold by amortizing the flow model over the initial populations.
arXiv Detail & Related papers (2024-08-26T20:05:31Z) - Geodesic Optimization for Predictive Shift Adaptation on EEG data [53.58711912565724]
Domain adaptation methods struggle when distribution shifts occur simultaneously in $X$ and $y$.
This paper proposes a novel method termed Geodesic Optimization for Predictive Shift Adaptation (GOPSA) to address test-time multi-source DA.
GOPSA has the potential to combine the advantages of mixed-effects modeling with machine learning for biomedical applications of EEG.
arXiv Detail & Related papers (2024-07-04T12:15:42Z) - Genomics-guided Representation Learning for Pathologic Pan-cancer Tumor Microenvironment Subtype Prediction [7.502459517962686]
We propose PathoTME, a genomics-guided representation learning framework employing Whole Slide Image (WSI) for pan-cancer TME subtypes prediction.
Our model achieves better performance than other state-of-the-art methods across 23 cancer types on TCGA dataset.
arXiv Detail & Related papers (2024-06-10T17:56:21Z) - MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction
Prediction via Microenvironment-Aware Protein Embedding [82.31506767274841]
Protein-Protein Interactions (PPIs) are fundamental in various biological processes and play a key role in life activities.
MPAE-PPI encodes microenvironments into chemically meaningful discrete codes via a sufficiently large microenvironment "vocabulary"
MPAE-PPI can scale to PPI prediction with millions of PPIs with superior trade-offs between effectiveness and computational efficiency.
arXiv Detail & Related papers (2024-02-22T09:04:41Z) - Evaluation of Activated Sludge Settling Characteristics from Microscopy Images with Deep Convolutional Neural Networks and Transfer Learning [7.636901972162706]
This study presents an innovative computer vision-based approach to assess activated sludge-settling characteristics.
Implementing the transfer learning of deep convolutional neural network (CNN) models, this approach aims to overcome the limitations of existing quantitative image analysis techniques.
Various CNN architectures, including Inception v3, ResNet18, ResNet152, ConvNeXt-nano, and ConvNeXt-S, were tested to evaluate their performance in predicting sludge settling characteristics.
arXiv Detail & Related papers (2024-02-14T18:13:37Z) - Human Limits in Machine Learning: Prediction of Plant Phenotypes Using
Soil Microbiome Data [0.2812395851874055]
We provide the first deep investigation of the predictive potential of machine learning models to understand the connections between soil and biological phenotypes.
We show that prediction is improved when incorporating environmental features like soil physicochemical properties and microbial population density into the models.
arXiv Detail & Related papers (2023-06-19T20:52:37Z) - Three-dimensional microstructure generation using generative adversarial
neural networks in the context of continuum micromechanics [77.34726150561087]
This work proposes a generative adversarial network tailored towards three-dimensional microstructure generation.
The lightweight algorithm is able to learn the underlying properties of the material from a single microCT-scan without the need of explicit descriptors.
arXiv Detail & Related papers (2022-05-31T13:26:51Z) - Graph Neural Networks for Microbial Genome Recovery [64.91162205624848]
We propose to use Graph Neural Networks (GNNs) to leverage the assembly graph when learning contig representations for metagenomic binning.
Our method, VaeG-Bin, combines variational autoencoders for learning latent representations of the individual contigs, with GNNs for refining these representations by taking into account the neighborhood structure of the contigs in the assembly graph.
arXiv Detail & Related papers (2022-04-26T12:49:51Z) - Towards an Automatic Analysis of CHO-K1 Suspension Growth in
Microfluidic Single-cell Cultivation [63.94623495501023]
We propose a novel Machine Learning architecture, which allows us to infuse a neural deep network with human-powered abstraction on the level of data.
Specifically, we train a generative model simultaneously on natural and synthetic data, so that it learns a shared representation, from which a target variable, such as the cell count, can be reliably estimated.
arXiv Detail & Related papers (2020-10-20T08:36:51Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.