LVADNet3D: A Deep Autoencoder for Reconstructing 3D Intraventricular Flow from Sparse Hemodynamic Data
- URL: http://arxiv.org/abs/2509.16860v1
- Date: Sun, 21 Sep 2025 01:20:25 GMT
- Title: LVADNet3D: A Deep Autoencoder for Reconstructing 3D Intraventricular Flow from Sparse Hemodynamic Data
- Authors: Mohammad Abdul Hafeez Khan, Marcello Mattei Di Eugeni, Benjamin Diaz, Ruth E. White, Siddhartha Bhattacharyya, Venkat Keshav Chivukula,
- Abstract summary: We propose LVADNet3D, a 3D convolutional autoencoder that reconstructs full-resolution intraventricular velocity fields from sparse velocity vector inputs.<n>We generate a high-resolution synthetic dataset of intraventricular blood flow in LVAD-supported hearts using CFD simulations.<n>Across various input configurations, LVADNet3D outperforms the baseline UNet3D model, yielding lower reconstruction error and higher PSNR results.
- Score: 2.6043530265581505
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Accurate assessment of intraventricular blood flow is essential for evaluating hemodynamic conditions in patients supported by Left Ventricular Assist Devices (LVADs). However, clinical imaging is either incompatible with LVADs or yields sparse, low-quality velocity data. While Computational Fluid Dynamics (CFD) simulations provide high-fidelity data, they are computationally intensive and impractical for routine clinical use. To address this, we propose LVADNet3D, a 3D convolutional autoencoder that reconstructs full-resolution intraventricular velocity fields from sparse velocity vector inputs. In contrast to a standard UNet3D model, LVADNet3D incorporates hybrid downsampling and a deeper encoder-decoder architecture with increased channel capacity to better capture spatial flow patterns. To train and evaluate the models, we generate a high-resolution synthetic dataset of intraventricular blood flow in LVAD-supported hearts using CFD simulations. We also investigate the effect of conditioning the models on anatomical and physiological priors. Across various input configurations, LVADNet3D outperforms the baseline UNet3D model, yielding lower reconstruction error and higher PSNR results.
Related papers
- KFD-NeRF: Rethinking Dynamic NeRF with Kalman Filter [49.85369344101118]
We introduce KFD-NeRF, a novel dynamic neural radiance field integrated with an efficient and high-quality motion reconstruction framework based on Kalman filtering.
Our key idea is to model the dynamic radiance field as a dynamic system whose temporally varying states are estimated based on two sources of knowledge: observations and predictions.
Our KFD-NeRF demonstrates similar or even superior performance within comparable computational time and state-of-the-art view synthesis performance with thorough training.
arXiv Detail & Related papers (2024-07-18T05:48:24Z) - Physics-Guided Neural Networks for Intraventricular Vector Flow Mapping [1.498019339784467]
We propose novel alternatives to the traditional iVFM optimization scheme by utilizing physics-informed neural networks (PINNs) and a physics-guided nnU-Net-based supervised approach.
Both approaches demonstrate comparable reconstruction performance to the original iVFM algorithm.
The study also suggests potential applications of PINNs in ultrafast color Doppler imaging and the incorporation of fluid dynamics equations to derive biomarkers for cardiovascular diseases based on blood flow.
arXiv Detail & Related papers (2024-03-19T17:35:17Z) - SE(3) symmetry lets graph neural networks learn arterial velocity
estimation from small datasets [3.861633648502351]
Hemodynamic velocity fields in coronary arteries could be the basis of valuable biomarkers for diagnosis, prognosis and treatment planning.
Velocity fields are typically obtained from patient-specific 3D artery models via computational fluid dynamics (CFD)
We propose graph neural networks (GNN) as an efficient black-box surrogate method to estimate 3D velocity fields.
arXiv Detail & Related papers (2023-02-17T09:42:38Z) - Transient Hemodynamics Prediction Using an Efficient Octree-Based Deep
Learning Model [0.0]
We present an architecture that is tailored to predict high-resolution (spatial and temporal) velocity fields for complex synthetic vascular geometries.
Compared to CFD simulations, the velocity field can be estimated with a mean absolute error of 0.024 m/s, whereas the run time reduces from several hours on a high-performance cluster to a few seconds on a consumer graphical processing unit.
arXiv Detail & Related papers (2023-02-13T17:56:00Z) - Mesh Neural Networks for SE(3)-Equivariant Hemodynamics Estimation on the Artery Wall [13.113110989699571]
We consider the estimation of vector-valued quantities on the wall of three-dimensional geometric artery models.
We employ group equivariant graph convolution in an end-to-end SE(3)-equivariant neural network that operates directly on triangular surface meshes.
We show that our method is powerful enough to accurately predict transient, vector-valued WSS over the cardiac cycle while conditioned on a range of different inflow boundary conditions.
arXiv Detail & Related papers (2022-12-09T18:16:06Z) - NAF: Neural Attenuation Fields for Sparse-View CBCT Reconstruction [79.13750275141139]
This paper proposes a novel and fast self-supervised solution for sparse-view CBCT reconstruction.
The desired attenuation coefficients are represented as a continuous function of 3D spatial coordinates, parameterized by a fully-connected deep neural network.
A learning-based encoder entailing hash coding is adopted to help the network capture high-frequency details.
arXiv Detail & Related papers (2022-09-29T04:06:00Z) - Learned Vertex Descent: A New Direction for 3D Human Model Fitting [64.04726230507258]
We propose a novel optimization-based paradigm for 3D human model fitting on images and scans.
Our approach is able to capture the underlying body of clothed people with very different body shapes, achieving a significant improvement compared to state-of-the-art.
LVD is also applicable to 3D model fitting of humans and hands, for which we show a significant improvement to the SOTA with a much simpler and faster method.
arXiv Detail & Related papers (2022-05-12T17:55:51Z) - Advancing 3D Medical Image Analysis with Variable Dimension Transform
based Supervised 3D Pre-training [45.90045513731704]
This paper revisits an innovative yet simple fully-supervised 3D network pre-training framework.
With a redesigned 3D network architecture, reformulated natural images are used to address the problem of data scarcity.
Comprehensive experiments on four benchmark datasets demonstrate that the proposed pre-trained models can effectively accelerate convergence.
arXiv Detail & Related papers (2022-01-05T03:11:21Z) - Mesh convolutional neural networks for wall shear stress estimation in
3D artery models [7.7393800633675465]
We propose to use mesh convolutional neural networks that directly operate on the same finite-element surface mesh as used in CFD.
We show that our flexible deep learning model can accurately predict 3D wall shear stress vectors on this surface mesh.
arXiv Detail & Related papers (2021-09-10T11:32:05Z) - Deep Implicit Statistical Shape Models for 3D Medical Image Delineation [47.78425002879612]
3D delineation of anatomical structures is a cardinal goal in medical imaging analysis.
Prior to deep learning, statistical shape models that imposed anatomical constraints and produced high quality surfaces were a core technology.
We present deep implicit statistical shape models (DISSMs), a new approach to delineation that marries the representation power of CNNs with the robustness of SSMs.
arXiv Detail & Related papers (2021-04-07T01:15:06Z) - 3D Convolutional Neural Networks for Stalled Brain Capillary Detection [72.21315180830733]
Brain vasculature dysfunctions such as stalled blood flow in cerebral capillaries are associated with cognitive decline and pathogenesis in Alzheimer's disease.
Here, we describe a deep learning-based approach for automatic detection of stalled capillaries in brain images based on 3D convolutional neural networks.
In this setting, our approach outperformed other methods and demonstrated state-of-the-art results, achieving 0.85 Matthews correlation coefficient, 85% sensitivity, and 99.3% specificity.
arXiv Detail & Related papers (2021-04-04T20:30:14Z) - Revisiting 3D Context Modeling with Supervised Pre-training for
Universal Lesion Detection in CT Slices [48.85784310158493]
We propose a Modified Pseudo-3D Feature Pyramid Network (MP3D FPN) to efficiently extract 3D context enhanced 2D features for universal lesion detection in CT slices.
With the novel pre-training method, the proposed MP3D FPN achieves state-of-the-art detection performance on the DeepLesion dataset.
The proposed 3D pre-trained weights can potentially be used to boost the performance of other 3D medical image analysis tasks.
arXiv Detail & Related papers (2020-12-16T07:11:16Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.