AI-based Prediction of Biochemical Recurrence from Biopsy and Prostatectomy Samples
- URL: http://arxiv.org/abs/2601.21022v1
- Date: Wed, 28 Jan 2026 20:33:15 GMT
- Title: AI-based Prediction of Biochemical Recurrence from Biopsy and Prostatectomy Samples
- Authors: Andrea Camilloni, Chiara Micoli, Nita Mulliqi, Erik Everett Palm, Thorgerdur Palsdottir, Kelvin Szolnoky, Xiaoyi Ji, Sol Erika Boman, Andrea Discacciati, Henrik Grönberg, Lars Egevad, Tobias Nordström, Kimmo Kartasalo, Martin Eklund,
- Abstract summary: Biochemical recurrence (BCR) after radical prostatectomy is a surrogate marker for aggressive prostate cancer.<n>We trained an AI-based model on diagnostic prostate biopsy slides to predict patient-specific risk of BCR.
- Score: 0.012216782333971603
- License: http://creativecommons.org/licenses/by-nc-nd/4.0/
- Abstract: Biochemical recurrence (BCR) after radical prostatectomy (RP) is a surrogate marker for aggressive prostate cancer with adverse outcomes, yet current prognostic tools remain imprecise. We trained an AI-based model on diagnostic prostate biopsy slides from the STHLM3 cohort (n = 676) to predict patient-specific risk of BCR, using foundation models and attention-based multiple instance learning. Generalizability was assessed across three external RP cohorts: LEOPARD (n = 508), CHIMERA (n = 95), and TCGA-PRAD (n = 379). The image-based approach achieved 5-year time-dependent AUCs of 0.64, 0.70, and 0.70, respectively. Integrating clinical variables added complementary prognostic value and enabled statistically significant risk stratification. Compared with guideline-based CAPRA-S, AI incrementally improved postoperative prognostication. These findings suggest biopsy-trained histopathology AI can generalize across specimen types to support preoperative and postoperative decision making, but the added value of AI-based multimodal approaches over simpler predictive models should be critically scrutinized in further studies.
Related papers
- Investigating the Impact of Histopathological Foundation Models on Regressive Prediction of Homologous Recombination Deficiency [52.50039435394964]
We systematically evaluate foundation models for regression-based tasks.<n>We extract patch-level features from whole slide images (WSI) using five state-of-the-art foundation models.<n>Models are trained to predict continuous HRD scores based on these extracted features across breast, endometrial, and lung cancer cohorts.
arXiv Detail & Related papers (2026-01-29T14:06:50Z) - Breast Cancer Recurrence Risk Prediction Based on Multiple Instance Learning [0.0]
This study investigates the potential of computational pathology to stratify patients using deep learning on routine Hematoxylin and Eosin stained whole-slide images (WSIs)<n>We developed and compared three Multiple Instance Learning frameworks -- CLAM-SB, ABMIL, and ConvNeXt-MIL-XGBoost -- on an in-house dataset of 210 patient cases.<n>In a 5-fold cross-validation, the modified CLAM-SB model demonstrated the strongest performance, achieving a mean Area Under the Curve (AUC) of 0.836 and a classification accuracy of 76.2%.
arXiv Detail & Related papers (2025-12-21T13:46:50Z) - Data reuse enables cost-efficient randomized trials of medical AI models [38.36499561588967]
We propose BRIDGE, a data-reuse RCT design for AI-based risk models.<n>BRIDGE trials recycle participant-level data from completed trials of AI models when legacy and updated models make concordant predictions.<n>We simulate a series of breast cancer screening studies, where our design reduced required enrollment by 46.6%--saving over US$2.8 million--while maintaining 80% power.
arXiv Detail & Related papers (2025-11-12T05:09:00Z) - PROFUSEme: PROstate Cancer Biochemical Recurrence Prediction via FUSEd Multi-modal Embeddings [2.83458288358676]
Almost 30% of prostate cancer (PCa) patients experience biochemical recurrence (BCR), characterized by increased prostate specific antigen (PSA) and associated with increased mortality.<n>We propose prostate cancer BCR prediction via fused multi-modal embeddings (PROFUSEme), which learns cross-modal interactions of clinical, radiology, and pathology data.
arXiv Detail & Related papers (2025-09-17T14:54:29Z) - A Metabolic-Imaging Integrated Model for Prognostic Prediction in Colorectal Liver Metastases [5.6492616107251274]
This study developed and validated a robust machine learning model for predicting postoperative recurrence risk.<n>We restricted input variables to preoperative baseline clinical parameters and radiomic features from contrast-enhanced CT imaging.<n>The 3-month recurrence prediction model demonstrated optimal performance with an AUC of 0.723 in cross-validation.
arXiv Detail & Related papers (2025-07-26T01:29:38Z) - Histopathology Based AI Model Predicts Anti-Angiogenic Therapy Response in Renal Cancer Clinical Trial [0.6087644423424302]
We present a novel deep learning (DL) approach to predict the Angioscore from ubiquitous histopathology slides.
Our model produces a visual vascular network which is the basis of the model's prediction.
Our approach offers insights into angiogenesis biology and AA treatment response.
arXiv Detail & Related papers (2024-05-28T16:21:20Z) - Prediction of Breast Cancer Recurrence Risk Using a Multi-Model Approach
Integrating Whole Slide Imaging and Clinicopathologic Features [0.6679306163028237]
The aim of this study was to develop a multi-model approach integrating the analysis of whole slide images and clinicopathologic data to predict associated breast cancer recurrence risks.
The proposed novel methodology uses convolutional neural networks for feature extraction and vision transformers for contextual aggregation.
arXiv Detail & Related papers (2024-01-28T23:33:56Z) - Neural Network-Based Histologic Remission Prediction In Ulcerative
Colitis [38.150634108667774]
Histologic remission is a new therapeutic target in ulcerative colitis (UC)
Endocytoscopy (EC) is a novel ultra-high magnification endoscopic technique.
We propose a neural network model that can assess histological disease activity in EC images.
arXiv Detail & Related papers (2023-08-28T15:54:14Z) - Regression-based Deep-Learning predicts molecular biomarkers from
pathology slides [40.24757332810004]
We developed and evaluated a new self-supervised attention-based weakly supervised regression method that predicts continuous biomarkers directly from images.
Using regression significantly enhances the accuracy of biomarker prediction, while also improving the interpretability of the results over classification.
Our open-source regression approach offers a promising alternative for continuous biomarker analysis in computational pathology.
arXiv Detail & Related papers (2023-04-11T11:43:51Z) - Towards Outcome-Driven Patient Subgroups: A Machine Learning Analysis
Across Six Depression Treatment Studies [41.34047608276278]
We analyzed data from six clinical trials of pharmacological treatment for depression using a neural network model.
A model classifying remission and outputting individual remission probabilities for five first-line monotherapies and three combination treatments was trained.
Post-hoc analyses yielded clusters (subgroups) based on patient prototypes learned during training.
arXiv Detail & Related papers (2023-03-24T14:34:09Z) - Deep learning-based approach to reveal tumor mutational burden status
from whole slide images across multiple cancer types [41.61294299606317]
Tumor mutational burden (TMB) is a potential genomic biomarker of immunotherapy.
TMB detected through whole exome sequencing lacks clinical penetration in low-resource settings.
In this study, we proposed a multi-scale deep learning framework to address the detection of TMB status from routinely used whole slide images.
arXiv Detail & Related papers (2022-04-07T07:02:32Z) - Comparison of Machine Learning Classifiers to Predict Patient Survival
and Genetics of GBM: Towards a Standardized Model for Clinical Implementation [44.02622933605018]
Radiomic models have been shown to outperform clinical data for outcome prediction in glioblastoma (GBM)
We aimed to compare nine machine learning classifiers to predict overall survival (OS), isocitrate dehydrogenase (IDH) mutation, O-6-methylguanine-DNA-methyltransferase (MGMT) promoter methylation, epidermal growth factor receptor (EGFR) VII amplification and Ki-67 expression in GBM patients.
xGB obtained maximum accuracy for OS (74.5%), AB for IDH mutation (88%), MGMT methylation (71,7%), Ki-67 expression (86,6%), and EGFR amplification (81,
arXiv Detail & Related papers (2021-02-10T15:10:37Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.