A Unified Benchmark of Deep Learning Models for Multi-task 3D Brain Tumor Segmentation from Magnetic Resonance Imaging
- URL: http://arxiv.org/abs/2607.28858v1
- Date: Thu, 30 Jul 2026 21:56:03 GMT
- Title: A Unified Benchmark of Deep Learning Models for Multi-task 3D Brain Tumor Segmentation from Magnetic Resonance Imaging
- Abstract summary: This work presents a unified benchmark for comparing representative convolutional neural networks (CNNs) and Transformer-based models.<n>Five state-of-the-art three-dimensional segmentation models, including 3D U-Net, SegResNet, Swin UNETR, SegMamba, and SegMambaV2, are evaluated.<n>Performance is assessed using segmentation accuracy metrics together with computational cost indicators, including inference time and the size of each model.
- Score: 0.0
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Automatic brain tumor segmentation from magnetic resonance imaging (MRI) has become a fundamental task in computer-assisted diagnosis, treatment planning, and disease monitoring. Although numerous deep learning architectures have recently been proposed, objective comparisons remain challenging because published studies often employ different datasets, preprocessing strategies, training protocols, and evaluation procedures. This work presents a unified experimental benchmark for comparing representative convolutional neural networks (CNNs), Transformer-based models, and recent State Space Model (SSM) architectures under homogeneous experimental conditions. Five state-of-the-art three-dimensional segmentation models, including 3D U-Net, SegResNet, Swin UNETR, SegMamba, and SegMambaV2, are evaluated on two brain tumor segmentation datasets representing distinct clinical scenarios: intracranial meningioma segmentation (BraTS 2023) and post-treatment glioma segmentation (BraTS 2024). All architectures are trained using identical preprocessing, data augmentation, optimization strategies, and evaluation protocols to ensure a fair comparison. Performance is assessed using segmentation accuracy metrics together with computational cost indicators, including inference time and the size of each model. The results provide practical insights into the trade-offs between segmentation accuracy and computational efficiency, highlighting the suitability of different architectural paradigms for challenging three-dimensional brain tumor segmentation tasks.
Related papers
- D3Seg: Dependency-Aware Diffusion for Brain Tumor Segmentation with Missing Modalities [54.87947751720332]
We propose a novel segmentation model D3Seg to maintain stable performance under missing-modality settings.<n>The proposed model achieves approximately 1.5-2.0% Dice improvement on enhancing tumor (ET) and around 1.0% on tumor core (TC) across multiple missing modality configurations.
arXiv Detail & Related papers (2026-05-21T09:55:42Z) - A Systematic Benchmark of GAN Architectures for MRI-to-CT Synthesis [38.31064949197421]
Generative Adversarial Network (GAN) architectures have been proposed for MRI-to-CT translation.<n>We present a benchmark of ten GAN evaluated on the SynthRAD2025 dataset across three anatomical districts.
arXiv Detail & Related papers (2026-03-13T18:54:20Z) - ReCoGNet: Recurrent Context-Guided Network for 3D MRI Prostate Segmentation [11.248082139905865]
We propose a hybrid architecture that models MRI sequences as annotated data.<n>Our method uses a deep, preserving pretrained DeepVLab3 backbone to extract high-level semantic features from each MRI slice and a recurrent convolutional head, built with ConvLSTM layers, to integrate information across slices.<n>Compared to state-of-the-art 2D and 3D segmentation models, our approach demonstrates superior performance in terms of precision, recall, Intersection over Union (IoU), Dice Similarity Coefficient (DSC) and robustness.
arXiv Detail & Related papers (2025-06-24T14:56:55Z) - Multi-encoder nnU-Net outperforms transformer models with self-supervised pretraining [0.0]
This study addresses the essential task of medical image segmentation, which involves the automatic identification and delineation of anatomical structures and pathological regions in medical images.<n>We propose a novel self-supervised learning Multi-encoder nnU-Net architecture designed to process multiple MRI modalities independently through separate encoders.<n>Our Multi-encoder nnU-Net demonstrates exceptional performance, achieving a Dice Similarity Coefficient (DSC) of 93.72%, which surpasses that of other models such as vanilla nnU-Net, SegResNet, and Swin UNETR.
arXiv Detail & Related papers (2025-04-04T14:31:06Z) - QUBIQ: Uncertainty Quantification for Biomedical Image Segmentation Challenge [93.61262892578067]
Uncertainty in medical image segmentation tasks, especially inter-rater variability, presents a significant challenge.
This variability directly impacts the development and evaluation of automated segmentation algorithms.
We report the set-up and summarize the benchmark results of the Quantification of Uncertainties in Biomedical Image Quantification Challenge (QUBIQ)
arXiv Detail & Related papers (2024-03-19T17:57:24Z) - Architecture Analysis and Benchmarking of 3D U-shaped Deep Learning Models for Thoracic Anatomical Segmentation [0.8897689150430447]
We conduct the first systematic benchmark study for variants of 3D U-shaped models.
Our study examines the impact of different attention mechanisms, the number of resolution stages, and network configurations on segmentation accuracy and computational complexity.
arXiv Detail & Related papers (2024-02-05T17:43:02Z) - CLIP-Driven Universal Model for Organ Segmentation and Tumor Detection [36.08551407926805]
We propose the CLIP-Driven Universal Model, which incorporates text embedding learned from Contrastive Language-Image Pre-training to segmentation models.
The proposed model is developed from an assembly of 14 datasets, using a total of 3,410 CT scans for training and then evaluated on 6,162 external CT scans from 3 additional datasets.
arXiv Detail & Related papers (2023-01-02T18:07:44Z) - FAST-AID Brain: Fast and Accurate Segmentation Tool using Artificial
Intelligence Developed for Brain [0.8376091455761259]
A novel deep learning method is proposed for fast and accurate segmentation of the human brain into 132 regions.
The proposed model uses an efficient U-Net-like network and benefits from the intersection points of different views and hierarchical relations.
The proposed method can be applied to brain MRI data including skull or any other artifacts without preprocessing the images or a drop in performance.
arXiv Detail & Related papers (2022-08-30T16:06:07Z) - CKD-TransBTS: Clinical Knowledge-Driven Hybrid Transformer with
Modality-Correlated Cross-Attention for Brain Tumor Segmentation [37.39921484146194]
Brain tumor segmentation in magnetic resonance image (MRI) is crucial for brain tumor diagnosis, cancer management and research purposes.
With the great success of the ten-year BraTS challenges, a lot of outstanding BTS models have been proposed to tackle the difficulties of BTS in different technical aspects.
We propose a clinical knowledge-driven brain tumor segmentation model, called CKD-TransBTS.
arXiv Detail & Related papers (2022-07-15T09:35:29Z) - Med-DANet: Dynamic Architecture Network for Efficient Medical Volumetric
Segmentation [13.158995287578316]
We propose a dynamic architecture network named Med-DANet to achieve effective accuracy and efficiency trade-off.
For each slice of the input 3D MRI volume, our proposed method learns a slice-specific decision by the Decision Network.
Our proposed method achieves comparable or better results than previous state-of-the-art methods for 3D MRI brain tumor segmentation.
arXiv Detail & Related papers (2022-06-14T03:25:58Z) - Cross-Modality Deep Feature Learning for Brain Tumor Segmentation [158.8192041981564]
This paper proposes a novel cross-modality deep feature learning framework to segment brain tumors from the multi-modality MRI data.
The core idea is to mine rich patterns across the multi-modality data to make up for the insufficient data scale.
Comprehensive experiments are conducted on the BraTS benchmarks, which show that the proposed cross-modality deep feature learning framework can effectively improve the brain tumor segmentation performance.
arXiv Detail & Related papers (2022-01-07T07:46:01Z) - VerSe: A Vertebrae Labelling and Segmentation Benchmark for
Multi-detector CT Images [121.31355003451152]
Large Scale Vertebrae Challenge (VerSe) was organised in conjunction with the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) in 2019 and 2020.
We present the the results of this evaluation and further investigate the performance-variation at vertebra-level, scan-level, and at different fields-of-view.
arXiv Detail & Related papers (2020-01-24T21:09:18Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.