Prior-Guided Implicit Neural Representations for Single-Subject Diffusion MRI Super-Resolution
- URL: http://arxiv.org/abs/2609.00981v1
- Date: Tue, 01 Sep 2026 09:38:23 GMT
- Title: Prior-Guided Implicit Neural Representations for Single-Subject Diffusion MRI Super-Resolution
- Abstract summary: Implicit neural representations (INRs) can model the diffusion signal continuously, enabling native single-subject super-resolution.<n>We propose a novel transfer-learning framework that pre-trains an INR on a high-resolution template and then adapts it to subject-specific scans via registration and fine-tuning.
- Score: 1.5832690217749017
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Resolving complex fiber geometries in brain white matter requires high-resolution diffusion MRI at the cost of long acquisition times. This leads many clinical protocols to opt for low-resolution scans, making downstream microstructure estimation and tractography challenging. Implicit neural representations (INRs) can model the diffusion signal continuously, enabling native single-subject super-resolution by querying the network at arbitrary spatial coordinates, yet existing methods often suffer from long training times and lack a mechanism to incorporate anatomical priors to regularize super-resolution by constraining the space of plausible reconstructions. To address these limitations, we propose a novel transfer-learning framework that pre-trains an INR on a high-resolution template and then adapts it to subject-specific scans via registration and fine-tuning. For $4\times$ through-plane super-resolution from 5 mm to 1.25 mm on Human Connectome Project (HCP) data, our method reduces NRMSE by 36-49% and increases FSIM by 24-43% over a recent baseline with $6\times$ faster training, outperforming competing INR-based methods across both image quality and domain-specific metrics. Code is available on the project page at https://abdulkaderghandoura.github.io/research/msc-thesis/ .
Related papers
- Hybrid Multi-Dimensional MRI Prostate Cancer Detection via Hadamard Network-Based Bias Correction and Residual Networks [4.984516442539689]
We propose the Hadamard-Bias Network plus ResNet18 (HBR-Net-18), a two-stage AI framework for PCa detection.<n>In the first stage, a Hadamard U-Net-based algorithm suppresses intensity inhomogeneities (bias fields) across six parametric HM-MRI maps.<n>In the second stage, a Residual Network (ResNet-18) performs patch-level classification.
arXiv Detail & Related papers (2026-04-18T18:49:21Z) - Resolution-Independent Neural Operators for Multi-Rate Sparse-View CT [67.14700058302016]
Deep learning methods achieve high-fidelity reconstructions but often overfit to a fixed acquisition setup.<n>We propose Computed Tomography neural Operator (CTO), a unified CT reconstruction framework that extends to continuous function space.<n>CTO enables consistent multi-sampling-rate and cross-resolution performance, with on average >4dB PSNR gain over CNNs.
arXiv Detail & Related papers (2025-12-13T08:31:46Z) - Towards a general-purpose foundation model for fMRI analysis [58.06455456423138]
We introduce NeuroSTORM, a framework that learns from 4D fMRI volumes and enables efficient knowledge transfer across diverse applications.<n>NeuroSTORM is pre-trained on 28.65 million fMRI frames (>9,000 hours) from over 50,000 subjects across multiple centers and ages 5 to 100.<n>It outperforms existing methods across five tasks: age/gender prediction, phenotype prediction, disease diagnosis, fMRI-to-image retrieval, and task-based fMRI.
arXiv Detail & Related papers (2025-06-11T23:51:01Z) - A Unified Model for Compressed Sensing MRI Across Undersampling Patterns [69.19631302047569]
We propose a unified MRI reconstruction model robust to various measurement undersampling patterns and image resolutions.<n>Our model improves SSIM by 11% and PSNR by 4 dB over a state-of-the-art CNN (End-to-End VarNet) with 600$times$ faster inference than diffusion methods.
arXiv Detail & Related papers (2024-10-05T20:03:57Z) - Cine cardiac MRI reconstruction using a convolutional recurrent network
with refinement [9.173298795526152]
We investigate the use of a convolutional recurrent neural network (CRNN) architecture to exploit temporal correlations in cardiac MRI reconstruction.
This is combined with a single-image super-resolution refinement module to improve single coil reconstruction by 4.4% in structural similarity and 3.9% in normalised mean square error.
The proposed model demonstrates considerable enhancements compared to the baseline case and holds promising potential for further improving cardiac MRI reconstruction.
arXiv Detail & Related papers (2023-09-23T14:07:04Z) - Coarse-Super-Resolution-Fine Network (CoSF-Net): A Unified End-to-End
Neural Network for 4D-MRI with Simultaneous Motion Estimation and
Super-Resolution [21.75329634476446]
We develop a novel deep learning framework called the coarse-super-resolution-fine network (CoSF-Net) to achieve simultaneous motion estimation and excavating super-resolution in a unified model.
Compared with existing networks and three state-of-the-art conventional algorithms, CoSF-Net not only accurately estimated the deformable vector fields between the respiratory phases of 4D-MRI but also simultaneously improved the spatial resolution of 4D-MRI with enhanced anatomic features.
arXiv Detail & Related papers (2022-11-21T01:42:51Z) - Model-Guided Multi-Contrast Deep Unfolding Network for MRI
Super-resolution Reconstruction [68.80715727288514]
We show how to unfold an iterative MGDUN algorithm into a novel model-guided deep unfolding network by taking the MRI observation matrix.
In this paper, we propose a novel Model-Guided interpretable Deep Unfolding Network (MGDUN) for medical image SR reconstruction.
arXiv Detail & Related papers (2022-09-15T03:58:30Z) - Localizing the Recurrent Laryngeal Nerve via Ultrasound with a Bayesian
Shape Framework [65.19784967388934]
Tumor infiltration of the recurrent laryngeal nerve (RLN) is a contraindication for robotic thyroidectomy and can be difficult to detect via standard laryngoscopy.
We propose a knowledge-driven framework for RLN localization, mimicking the standard approach surgeons take to identify the RLN according to its surrounding organs.
Experimental results indicate that the proposed method achieves superior hit rates and substantially smaller distance errors compared with state-of-the-art methods.
arXiv Detail & Related papers (2022-06-30T13:04:42Z) - RPLHR-CT Dataset and Transformer Baseline for Volumetric
Super-Resolution from CT Scans [12.066026343488453]
coarse resolution may lead to difficulties in medical diagnosis by either physicians or computer-aided diagnosis algorithms.
Deep learning-based volumetric super-resolution (SR) methods are feasible ways to improve resolution.
This paper builds the first public real-paired dataset RPLHR-CT as a benchmark for volumetric SR.
Considering the inherent shortcoming of CNN, we also propose a transformer volumetric super-resolution network (TVSRN) based on attention mechanisms.
arXiv Detail & Related papers (2022-06-13T15:35:59Z) - DFENet: A Novel Dimension Fusion Edge Guided Network for Brain MRI
Segmentation [0.0]
We propose a novel Dimension Fusion Edge-guided network (DFENet) that can meet both of these requirements by fusing the features of 2D and 3D CNNs.
The proposed model is robust, accurate, superior to the existing methods, and can be relied upon for biomedical applications.
arXiv Detail & Related papers (2021-05-17T15:43:59Z) - ShuffleUNet: Super resolution of diffusion-weighted MRIs using deep
learning [47.68307909984442]
Single Image Super-Resolution (SISR) is a technique aimed to obtain high-resolution (HR) details from one single low-resolution input image.
Deep learning extracts prior knowledge from big datasets and produces superior MRI images from the low-resolution counterparts.
arXiv Detail & Related papers (2021-02-25T14:52:23Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.