Deep OCT Angiography Image Generation for Motion Artifact Suppression
- URL: http://arxiv.org/abs/2001.02512v1
- Date: Wed, 8 Jan 2020 13:31:51 GMT
- Title: Deep OCT Angiography Image Generation for Motion Artifact Suppression
- Authors: Julian Hossbach, Lennart Husvogt, Martin F. Kraus, James G. Fujimoto,
Andreas K. Maier
- Abstract summary: Affected scans emerge as high intensity (white) or missing (black) regions, resulting in lost information.
Deep generative model for OCT to OCTA image translation relies on a single intact OCT scan.
A U-Net is trained to extract the angiographic information from OCT patches.
At inference, a detection algorithm finds outlier OCTA scans based on their surroundings, which are then replaced by the trained network.
- Score: 8.442020709975015
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Eye movements, blinking and other motion during the acquisition of optical
coherence tomography (OCT) can lead to artifacts, when processed to OCT
angiography (OCTA) images. Affected scans emerge as high intensity (white) or
missing (black) regions, resulting in lost information. The aim of this
research is to fill these gaps using a deep generative model for OCT to OCTA
image translation relying on a single intact OCT scan. Therefore, a U-Net is
trained to extract the angiographic information from OCT patches. At inference,
a detection algorithm finds outlier OCTA scans based on their surroundings,
which are then replaced by the trained network. We show that generative models
can augment the missing scans. The augmented volumes could then be used for 3-D
segmentation or increase the diagnostic value.
Related papers
- Multi-View Vertebra Localization and Identification from CT Images [57.56509107412658]
We propose a multi-view vertebra localization and identification from CT images.
We convert the 3D problem into a 2D localization and identification task on different views.
Our method can learn the multi-view global information naturally.
arXiv Detail & Related papers (2023-07-24T14:43:07Z) - Deep learning network to correct axial and coronal eye motion in 3D OCT
retinal imaging [65.47834983591957]
We propose deep learning based neural networks to correct axial and coronal motion artifacts in OCT based on a single scan.
The experimental result shows that the proposed method can effectively correct motion artifacts and achieve smaller error than other methods.
arXiv Detail & Related papers (2023-05-27T03:55:19Z) - Self-Attention Generative Adversarial Network for Iterative
Reconstruction of CT Images [0.9208007322096533]
The aim of this study is to train a single neural network to reconstruct high-quality CT images from noisy or incomplete data.
The network includes a self-attention block to model long-range dependencies in the data.
Our approach is shown to have comparable overall performance to CIRCLE GAN, while outperforming the other two approaches.
arXiv Detail & Related papers (2021-12-23T19:20:38Z) - SQUID: Deep Feature In-Painting for Unsupervised Anomaly Detection [76.01333073259677]
We propose the use of Space-aware Memory Queues for In-painting and Detecting anomalies from radiography images (abbreviated as SQUID)
We show that SQUID can taxonomize the ingrained anatomical structures into recurrent patterns; and in the inference, it can identify anomalies (unseen/modified patterns) in the image.
arXiv Detail & Related papers (2021-11-26T13:47:34Z) - CNN Filter Learning from Drawn Markers for the Detection of Suggestive
Signs of COVID-19 in CT Images [58.720142291102135]
We propose a method that does not require either large annotated datasets or backpropagation to estimate the filters of a convolutional neural network (CNN)
For a few CT images, the user draws markers at representative normal and abnormal regions.
The method generates a feature extractor composed of a sequence of convolutional layers, whose kernels are specialized in enhancing regions similar to the marked ones.
arXiv Detail & Related papers (2021-11-16T15:03:42Z) - Cross-Vendor CT Image Data Harmonization Using CVH-CT [9.920558110069221]
How to harmonize CT image data captured using different scanners is vital in cross-center large-scale radiomics studies.
We propose a novel deep learning approach called CVH-CT for harmonizing CT images captured using scanners from different vendors.
arXiv Detail & Related papers (2021-10-19T02:15:26Z) - LIFE: A Generalizable Autodidactic Pipeline for 3D OCT-A Vessel
Segmentation [5.457168581192045]
Recent deep learning algorithms produced promising vascular segmentation results.
However, 3D retinal vessel segmentation remains difficult due to the lack of manually annotated training data.
We propose a learning-based method that is only supervised by a self-synthesized modality.
arXiv Detail & Related papers (2021-07-09T07:51:33Z) - Automated Model Design and Benchmarking of 3D Deep Learning Models for
COVID-19 Detection with Chest CT Scans [72.04652116817238]
We propose a differentiable neural architecture search (DNAS) framework to automatically search for the 3D DL models for 3D chest CT scans classification.
We also exploit the Class Activation Mapping (CAM) technique on our models to provide the interpretability of the results.
arXiv Detail & Related papers (2021-01-14T03:45:01Z) - 4D Spatio-Temporal Convolutional Networks for Object Position Estimation
in OCT Volumes [69.62333053044712]
3D convolutional neural networks (CNNs) have shown promising performance for pose estimation of a marker object using single OCT images.
We extend 3D CNNs to 4D-temporal CNNs to evaluate the impact of additional temporal information for marker object tracking.
arXiv Detail & Related papers (2020-07-02T12:02:20Z) - Separation of target anatomical structure and occlusions in chest
radiographs [2.0478628221188497]
We propose a Fully Convolutional Network to suppress, for a specific task, undesired visual structure from radiographs.
The proposed algorithm creates reconstructed radiographs and ground-truth data from high resolution CT-scans.
arXiv Detail & Related papers (2020-02-03T14:01:06Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.