Individual Survival Curves with Conditional Normalizing Flows
- URL: http://arxiv.org/abs/2107.12825v1
- Date: Tue, 27 Jul 2021 13:45:12 GMT
- Title: Individual Survival Curves with Conditional Normalizing Flows
- Authors: Guillaume Ausset, Tom Ciffreo, Francois Portier, Stephan
Cl\'emen\c{c}on, Timoth\'ee Papin
- Abstract summary: We introduce here a conditional normalizing flow based estimate of the time-to-event density as a way to model highly flexible and individualized conditional survival distributions.
We experimentally validate the proposed approach on a synthetic dataset as well as four open medical datasets and an example of a common financial problem.
- Score: 0.0
- License: http://creativecommons.org/licenses/by-sa/4.0/
- Abstract: Survival analysis, or time-to-event modelling, is a classical statistical
problem that has garnered a lot of interest for its practical use in
epidemiology, demographics or actuarial sciences. Recent advances on the
subject from the point of view of machine learning have been concerned with
precise per-individual predictions instead of population studies, driven by the
rise of individualized medicine. We introduce here a conditional normalizing
flow based estimate of the time-to-event density as a way to model highly
flexible and individualized conditional survival distributions. We use a novel
hierarchical formulation of normalizing flows to enable efficient fitting of
flexible conditional distributions without overfitting and show how the
normalizing flow formulation can be efficiently adapted to the censored
setting. We experimentally validate the proposed approach on a synthetic
dataset as well as four open medical datasets and an example of a common
financial problem.
Related papers
- Meta Flow Matching: Integrating Vector Fields on the Wasserstein Manifold [83.18058549195855]
We argue that multiple processes in natural sciences have to be represented as vector fields on the Wasserstein manifold of probability densities.
In particular, this is crucial for personalized medicine where the development of diseases and their respective treatment response depends on the microenvironment of cells specific to each patient.
We propose Meta Flow Matching (MFM), a practical approach to integrating along these vector fields on the Wasserstein manifold by amortizing the flow model over the initial populations.
arXiv Detail & Related papers (2024-08-26T20:05:31Z) - Seeing Unseen: Discover Novel Biomedical Concepts via
Geometry-Constrained Probabilistic Modeling [53.7117640028211]
We present a geometry-constrained probabilistic modeling treatment to resolve the identified issues.
We incorporate a suite of critical geometric properties to impose proper constraints on the layout of constructed embedding space.
A spectral graph-theoretic method is devised to estimate the number of potential novel classes.
arXiv Detail & Related papers (2024-03-02T00:56:05Z) - Heterogeneous Datasets for Federated Survival Analysis Simulation [6.489759672413373]
This work proposes a novel technique for constructing realistic heterogeneous datasets by starting from existing non-federated datasets in a reproducible way.
Specifically, we provide two novel dataset-splitting algorithms based on the Dirichlet distribution to assign each data sample to a carefully chosen client.
The implementation of the proposed methods is publicly available in favor of and to encourage common practices to simulate federated environments for survival analysis.
arXiv Detail & Related papers (2023-01-28T11:37:07Z) - Training Normalizing Flows from Dependent Data [31.42053454078623]
We propose a likelihood objective of normalizing flows incorporating dependencies between the data points.
We show that respecting dependencies between observations can improve empirical results on both synthetic and real-world data.
arXiv Detail & Related papers (2022-09-29T16:50:34Z) - Continuous-Time Modeling of Counterfactual Outcomes Using Neural
Controlled Differential Equations [84.42837346400151]
Estimating counterfactual outcomes over time has the potential to unlock personalized healthcare.
Existing causal inference approaches consider regular, discrete-time intervals between observations and treatment decisions.
We propose a controllable simulation environment based on a model of tumor growth for a range of scenarios.
arXiv Detail & Related papers (2022-06-16T17:15:15Z) - STELAR: Spatio-temporal Tensor Factorization with Latent Epidemiological
Regularization [76.57716281104938]
We develop a tensor method to predict the evolution of epidemic trends for many regions simultaneously.
STELAR enables long-term prediction by incorporating latent temporal regularization through a system of discrete-time difference equations.
We conduct experiments using both county- and state-level COVID-19 data and show that our model can identify interesting latent patterns of the epidemic.
arXiv Detail & Related papers (2020-12-08T21:21:47Z) - Variational Disentanglement for Rare Event Modeling [21.269897066024306]
We propose a variational disentanglement approach to learn from rare events in heavily imbalanced classification problems.
Specifically, we leverage the imposed extreme-distribution behavior on a latent space to extract information from low-prevalence events.
arXiv Detail & Related papers (2020-09-17T21:35:36Z) - A General Framework for Survival Analysis and Multi-State Modelling [70.31153478610229]
We use neural ordinary differential equations as a flexible and general method for estimating multi-state survival models.
We show that our model exhibits state-of-the-art performance on popular survival data sets and demonstrate its efficacy in a multi-state setting.
arXiv Detail & Related papers (2020-06-08T19:24:54Z) - Variational Learning of Individual Survival Distributions [21.40142425105635]
We introduce a variational time-to-event prediction model, named Variational Survival Inference (VSI), which builds upon recent advances in distribution learning techniques and deep neural networks.
To validate effectiveness of our approach, an extensive set of experiments on both synthetic and real-world datasets is carried out, showing improved performance relative to competing solutions.
arXiv Detail & Related papers (2020-03-09T22:09:51Z) - Survival Cluster Analysis [93.50540270973927]
There is an unmet need in survival analysis for identifying subpopulations with distinct risk profiles.
An approach that addresses this need is likely to improve characterization of individual outcomes.
arXiv Detail & Related papers (2020-02-29T22:41:21Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.