Learning of Inter-Label Geometric Relationships Using Self-Supervised Learning: Application To Gleason Grade Segmentation

• URL: http://arxiv.org/abs/2110.00404v1
• Date: Fri, 1 Oct 2021 13:47:07 GMT
• Title: Learning of Inter-Label Geometric Relationships Using Self-Supervised Learning: Application To Gleason Grade Segmentation
• Authors: Dwarikanath Mahapatra
• Abstract summary: We propose a method to synthesize for PCa histopathology images by learning the geometrical relationship between different disease labels. We use a weakly supervised segmentation approach that uses Gleason score to segment the diseased regions. The resulting segmentation map is used to train a Shape Restoration Network (ShaRe-Net) to predict missing mask segments.
• Score: 4.898744396854313
• License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
• Abstract: Segmentation of Prostate Cancer (PCa) tissues from Gleason graded histopathology images is vital for accurate diagnosis. Although deep learning (DL) based segmentation methods achieve state-of-the-art accuracy, they rely on large datasets with manual annotations. We propose a method to synthesize for PCa histopathology images by learning the geometrical relationship between different disease labels using self-supervised learning. We use a weakly supervised segmentation approach that uses Gleason score to segment the diseased regions and the resulting segmentation map is used to train a Shape Restoration Network (ShaRe-Net) to predict missing mask segments in a self-supervised manner. Using DenseUNet as the backbone generator architecture we incorporate latent variable sampling to inject diversity in the image generation process and thus improve robustness. Experiments on multiple histopathology datasets demonstrate the superiority of our method over competing image synthesis methods for segmentation tasks. Ablation studies show the benefits of integrating geometry and diversity in generating high-quality images, and our self-supervised approach with limited class-labeled data achieves similar performance as fully supervised learning.

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