Building Open Knowledge Graph for Metal-Organic Frameworks (MOF-KG):
Challenges and Case Studies
- URL: http://arxiv.org/abs/2207.04502v2
- Date: Wed, 29 Nov 2023 17:20:33 GMT
- Title: Building Open Knowledge Graph for Metal-Organic Frameworks (MOF-KG):
Challenges and Case Studies
- Authors: Yuan An, Jane Greenberg, Xintong Zhao, Xiaohua Hu, Scott McCLellan,
Alex Kalinowski, Fernando J. Uribe-Romo, Kyle Langlois, Jacob Furst, Diego A.
G\'omez-Gualdr\'on, Fernando Fajardo-Rojas, Katherine Ardila
- Abstract summary: Metal-Organic Frameworks (MOFs) have great potential to revolutionize applications such as gas storage, molecular separations, chemical sensing, crystalline and drug delivery.
The Cambridge Structural Database (CSD) reports 10,636 synthesized MOF crystals which in addition contains ca. 114,373 MOF-like structures.
In this demo paper, we describe our effort on leveraging knowledge graph methods to facilitate MOF prediction, discovery, and synthesis.
- Score: 63.61566811532431
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Metal-Organic Frameworks (MOFs) are a class of modular, porous crystalline
materials that have great potential to revolutionize applications such as gas
storage, molecular separations, chemical sensing, catalysis, and drug delivery.
The Cambridge Structural Database (CSD) reports 10,636 synthesized MOF crystals
which in addition contains ca. 114,373 MOF-like structures. The sheer number of
synthesized (plus potentially synthesizable) MOF structures requires
researchers pursue computational techniques to screen and isolate MOF
candidates. In this demo paper, we describe our effort on leveraging knowledge
graph methods to facilitate MOF prediction, discovery, and synthesis. We
present challenges and case studies about (1) construction of a MOF knowledge
graph (MOF-KG) from structured and unstructured sources and (2) leveraging the
MOF-KG for discovery of new or missing knowledge.
Related papers
- MOFFlow: Flow Matching for Structure Prediction of Metal-Organic Frameworks [42.61784133509237]
Metal-organic frameworks (MOFs) are a class of crystalline materials with promising applications in many areas such as carbon capture and drug delivery.
Existing approaches, including ab initio calculations and even deep generative models, struggle with the complexity of MOF structures due to the large number of atoms in the unit cells.
We introduce MOFFlow, the first deep generative model tailored for MOF structure prediction.
arXiv Detail & Related papers (2024-10-07T13:51:58Z) - UniIF: Unified Molecule Inverse Folding [67.60267592514381]
We propose a unified model UniIF for inverse folding of all molecules.
Our proposed method surpasses state-of-the-art methods on all tasks.
arXiv Detail & Related papers (2024-05-29T10:26:16Z) - Scalable Diffusion for Materials Generation [99.71001883652211]
We develop a unified crystal representation that can represent any crystal structure (UniMat)
UniMat can generate high fidelity crystal structures from larger and more complex chemical systems.
We propose additional metrics for evaluating generative models of materials.
arXiv Detail & Related papers (2023-10-18T15:49:39Z) - MOFDiff: Coarse-grained Diffusion for Metal-Organic Framework Design [4.819734936375677]
Metal-organic frameworks (MOFs) are of immense interest in applications such as gas storage and carbon capture.
We propose MOFDiff: a coarse-grained (CG) diffusion model that generates CG MOF structures.
We evaluate our model's capability to generate valid and novel MOF structures and its effectiveness in designing outstanding MOF materials.
arXiv Detail & Related papers (2023-10-16T18:00:15Z) - MolGrapher: Graph-based Visual Recognition of Chemical Structures [50.13749978547401]
We introduce MolGrapher to recognize chemical structures visually.
We treat all candidate atoms and bonds as nodes and put them in a graph.
We classify atom and bond nodes in the graph with a Graph Neural Network.
arXiv Detail & Related papers (2023-08-23T16:16:11Z) - A generative artificial intelligence framework based on a molecular
diffusion model for the design of metal-organic frameworks for carbon capture [3.7693836475281297]
GHP-MOFassemble is a generative artificial intelligence framework for the rational and accelerated design of MOFs with high CO2 capacity and synthesizable linkers.
GHP-MOFassemble screens and validates AI-generated MOFs for uniqueness, synthesizability, structural validity.
We present the top six AI-generated MOFs with CO2 capacities greater than 2 $m mol/g$, higher than 96.9% of structures in the hypothetical MOF dataset.
arXiv Detail & Related papers (2023-06-14T18:32:26Z) - MOFormer: Self-Supervised Transformer model for Metal-Organic Framework
Property Prediction [7.367477168940467]
Metal-Organic Frameworks (MOFs) are materials with a high degree of porosity that can be used for applications in energy storage, water desalination, gas storage, and gas separation.
Finding the optimal MOFs for specific applications requires an efficient and accurate search over an enormous number of potential candidates.
We propose a structure-agnostic deep learning method based on the Transformer model, named as MOFormer, for property predictions of MOFs.
arXiv Detail & Related papers (2022-10-25T17:29:42Z) - BIGDML: Towards Exact Machine Learning Force Fields for Materials [55.944221055171276]
Machine-learning force fields (MLFF) should be accurate, computationally and data efficient, and applicable to molecules, materials, and interfaces thereof.
Here, we introduce the Bravais-Inspired Gradient-Domain Machine Learning approach and demonstrate its ability to construct reliable force fields using a training set with just 10-200 atoms.
arXiv Detail & Related papers (2021-06-08T10:14:57Z) - Graph Neural Network for Metal Organic Framework Potential Energy
Approximation [0.4588028371034407]
Metal-organic frameworks (MOFs) are nanoporous compounds composed of metal ions and organic linkers.
We propose a machine learning approach for estimating potential energy of candidate MOFs using a graph neural network.
We generate a database of 50,000 spatial configurations and high-quality potential energy values using DFT.
arXiv Detail & Related papers (2020-10-29T19:47:44Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.