Statistical Shape Modeling of Biventricular Anatomy with Shared
Boundaries
- URL: http://arxiv.org/abs/2209.02706v1
- Date: Tue, 6 Sep 2022 15:54:37 GMT
- Title: Statistical Shape Modeling of Biventricular Anatomy with Shared
Boundaries
- Authors: Krithika Iyer, Alan Morris, Brian Zenger, Karthik Karnath, Benjamin A
Orkild, Oleksandre Korshak, Shireen Elhabian
- Abstract summary: This paper presents a general and flexible data-driven approach for building statistical shape models of multi-organ anatomies with shared boundaries.
Shape changes within these shared boundaries of the heart can indicate potential pathological changes that lead to uncoordinated contraction and poor end-organ perfusion.
- Score: 16.287876512923084
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Statistical shape modeling (SSM) is a valuable and powerful tool to generate
a detailed representation of complex anatomy that enables quantitative analysis
and the comparison of shapes and their variations. SSM applies mathematics,
statistics, and computing to parse the shape into a quantitative representation
(such as correspondence points or landmarks) that will help answer various
questions about the anatomical variations across the population. Complex
anatomical structures have many diverse parts with varying interactions or
intricate architecture. For example, the heart is four-chambered anatomy with
several shared boundaries between chambers. Coordinated and efficient
contraction of the chambers of the heart is necessary to adequately perfuse end
organs throughout the body. Subtle shape changes within these shared boundaries
of the heart can indicate potential pathological changes that lead to
uncoordinated contraction and poor end-organ perfusion. Early detection and
robust quantification could provide insight into ideal treatment techniques and
intervention timing. However, existing SSM approaches fall short of explicitly
modeling the statistics of shared boundaries. This paper presents a general and
flexible data-driven approach for building statistical shape models of
multi-organ anatomies with shared boundaries that capture morphological and
alignment changes of individual anatomies and their shared boundary surfaces
throughout the population. We demonstrate the effectiveness of the proposed
methods using a biventricular heart dataset by developing shape models that
consistently parameterize the cardiac biventricular structure and the
interventricular septum (shared boundary surface) across the population data.
Related papers
- Anatomy-guided Pathology Segmentation [56.883822515800205]
We develop a generalist segmentation model that combines anatomical and pathological information, aiming to enhance the segmentation accuracy of pathological features.
Our Anatomy-Pathology Exchange (APEx) training utilizes a query-based segmentation transformer which decodes a joint feature space into query-representations for human anatomy.
In doing so, we are able to report the best results across the board on FDG-PET-CT and Chest X-Ray pathology segmentation tasks with a margin of up to 3.3% as compared to strong baseline methods.
arXiv Detail & Related papers (2024-07-08T11:44:15Z) - ReshapeIT: Reliable Shape Interaction with Implicit Template for Anatomical Structure Reconstruction [59.971808117043366]
ReShapeIT represents an anatomical structure with an implicit template field shared within the same category.
It ensures the implicit template field generates valid templates by strengthening the constraint of the correspondence between the instance shape and the template shape.
A template Interaction Module is introduced to reconstruct unseen shapes by interacting the valid template shapes with the instance-wise latent codes.
arXiv Detail & Related papers (2023-12-11T07:09:32Z) - Shape of my heart: Cardiac models through learned signed distance functions [33.29148402516714]
In this work, the cardiac shape is reconstructed by means of three-dimensional deep signed distance functions with Lipschitz regularity.
For this purpose, the shapes of cardiac MRI reconstructions are learned to model the spatial relation of multiple chambers.
We demonstrate that this approach is also capable of reconstructing anatomical models from partial data, such as point clouds from a single ventricle.
arXiv Detail & Related papers (2023-08-31T09:02:53Z) - S3M: Scalable Statistical Shape Modeling through Unsupervised
Correspondences [91.48841778012782]
We propose an unsupervised method to simultaneously learn local and global shape structures across population anatomies.
Our pipeline significantly improves unsupervised correspondence estimation for SSMs compared to baseline methods.
Our method is robust enough to learn from noisy neural network predictions, potentially enabling scaling SSMs to larger patient populations.
arXiv Detail & Related papers (2023-04-15T09:39:52Z) - A Generative Shape Compositional Framework to Synthesise Populations of
Virtual Chimaeras [52.33206865588584]
We introduce a generative shape model for complex anatomical structures, learnable from datasets of unpaired datasets.
We build virtual chimaeras from databases of whole-heart shape assemblies that each contribute samples for heart substructures.
Our approach significantly outperforms a PCA-based shape model (trained with complete data) in terms of generalisability and specificity.
arXiv Detail & Related papers (2022-10-04T13:36:52Z) - Anatomically Parameterized Statistical Shape Model: Explaining
Morphometry through Statistical Learning [0.0]
This study demonstrates the use of anatomical representation for creating anatomically parameterized SSM.
The proposed models could help analyze differences in relevant bone morphometry between populations, and be integrated in patient-specific pre-surgery planning or in-surgery assessment.
arXiv Detail & Related papers (2022-02-17T10:56:22Z) - Learning Population-level Shape Statistics and Anatomy Segmentation From
Images: A Joint Deep Learning Model [0.0]
Point distribution models (PDMs) represent the anatomical surface via a dense set of correspondences.
We propose a deep-learning-based framework that simultaneously learns these two coordinate spaces directly from the volumetric images.
The proposed joint model serves a dual purpose; the world correspondences can directly be used for shape analysis applications, circumventing the heavy pre-processing and segmentation involved in traditional PDM models.
arXiv Detail & Related papers (2022-01-10T17:24:35Z) - Generalized Organ Segmentation by Imitating One-shot Reasoning using
Anatomical Correlation [55.1248480381153]
We propose OrganNet which learns a generalized organ concept from a set of annotated organ classes and then transfer this concept to unseen classes.
We show that OrganNet can effectively resist the wide variations in organ morphology and produce state-of-the-art results in one-shot segmentation task.
arXiv Detail & Related papers (2021-03-30T13:41:12Z) - Learning Deep Features for Shape Correspondence with Domain Invariance [10.230933226423984]
Correspondence-based shape models are key to various medical imaging applications that rely on a statistical analysis of anatomies.
This paper proposes an automated feature learning approach, using deep convolutional neural networks to extract correspondence-friendly features from shape ensembles.
arXiv Detail & Related papers (2021-02-21T02:25:32Z) - Benchmarking off-the-shelf statistical shape modeling tools in clinical
applications [53.47202621511081]
We systematically assess the outcome of widely used, state-of-the-art SSM tools.
We propose validation frameworks for anatomical landmark/measurement inference and lesion screening.
ShapeWorks and Deformetrica shape models are found to capture clinically relevant population-level variability.
arXiv Detail & Related papers (2020-09-07T03:51:35Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.