GRASPing Anatomy to Improve Pathology Segmentation
- URL: http://arxiv.org/abs/2508.03374v1
- Date: Tue, 05 Aug 2025 12:26:36 GMT
- Title: GRASPing Anatomy to Improve Pathology Segmentation
- Authors: Keyi Li, Alexander Jaus, Jens Kleesiek, Rainer Stiefelhagen,
- Abstract summary: We introduce GRASP, a modular plug-and-play framework that enhances pathology segmentation models.<n>We evaluate GRASP on two PET/CT datasets, conduct systematic ablation studies, and investigate the framework's inner workings.
- Score: 67.98147643529309
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Radiologists rely on anatomical understanding to accurately delineate pathologies, yet most current deep learning approaches use pure pattern recognition and ignore the anatomical context in which pathologies develop. To narrow this gap, we introduce GRASP (Guided Representation Alignment for the Segmentation of Pathologies), a modular plug-and-play framework that enhances pathology segmentation models by leveraging existing anatomy segmentation models through pseudolabel integration and feature alignment. Unlike previous approaches that obtain anatomical knowledge via auxiliary training, GRASP integrates into standard pathology optimization regimes without retraining anatomical components. We evaluate GRASP on two PET/CT datasets, conduct systematic ablation studies, and investigate the framework's inner workings. We find that GRASP consistently achieves top rankings across multiple evaluation metrics and diverse architectures. The framework's dual anatomy injection strategy, combining anatomical pseudo-labels as input channels with transformer-guided anatomical feature fusion, effectively incorporates anatomical context.
Related papers
- CA-Diff: Collaborative Anatomy Diffusion for Brain Tissue Segmentation [9.51662728609265]
Collaborative Diffusion (CA-Diff) is a framework integrating spatial anatomical features to enhance segmentation accuracy.<n>We introduce distance field as an auxiliary anatomical condition to provide global spatial context.<n>We also introduce a consistency loss to refine relationships between the distance field and anatomical structures.
arXiv Detail & Related papers (2025-06-28T13:39:09Z) - Anatomy-guided Pathology Segmentation [56.883822515800205]
We develop a generalist segmentation model that combines anatomical and pathological information, aiming to enhance the segmentation accuracy of pathological features.
Our Anatomy-Pathology Exchange (APEx) training utilizes a query-based segmentation transformer which decodes a joint feature space into query-representations for human anatomy.
In doing so, we are able to report the best results across the board on FDG-PET-CT and Chest X-Ray pathology segmentation tasks with a margin of up to 3.3% as compared to strong baseline methods.
arXiv Detail & Related papers (2024-07-08T11:44:15Z) - HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis [19.04633470168871]
Panoramic image segmentation in computational pathology presents a remarkable challenge due to the morphologically complex and variably scaled anatomy.
In this paper, we propose a novel Hierarchical Adaptive Taxonomy (HATs) method, which is designed to thoroughly segment panoramic views of kidney structures by leveraging detailed anatomical insights.
Our approach entails (1) the innovative HATs technique which translates spatial relationships among 15 distinct object classes into a versatile "plug-and-play" loss function that spans across regions, functional units, and cells, (2) the incorporation of anatomical hierarchies and scale considerations into a unified simple matrix representation for all panoramic entities, and (3) the
arXiv Detail & Related papers (2024-06-30T05:35:26Z) - Region-based Contrastive Pretraining for Medical Image Retrieval with
Anatomic Query [56.54255735943497]
Region-based contrastive pretraining for Medical Image Retrieval (RegionMIR)
We introduce a novel Region-based contrastive pretraining for Medical Image Retrieval (RegionMIR)
arXiv Detail & Related papers (2023-05-09T16:46:33Z) - Seeking Common Ground While Reserving Differences: Multiple Anatomy
Collaborative Framework for Undersampled MRI Reconstruction [49.16058553281751]
We present a novel deep MRI reconstruction framework with both anatomy-shared and anatomy-specific parameterized learners.
Experiments on brain, knee and cardiac MRI datasets demonstrate that three of these learners are able to enhance reconstruction performance via multiple anatomy collaborative learning.
arXiv Detail & Related papers (2022-06-15T08:19:07Z) - Anatomy X-Net: A Semi-Supervised Anatomy Aware Convolutional Neural
Network for Thoracic Disease Classification [3.888080947524813]
This work proposes an anatomy-aware attention-based architecture named Anatomy X-Net.
It prioritizes the spatial features guided by the pre-identified anatomy regions.
Our proposed method sets new state-of-the-art performance on the official NIH test set with an AUC score of 0.8439.
arXiv Detail & Related papers (2021-06-10T17:01:23Z) - Few-shot Medical Image Segmentation using a Global Correlation Network
with Discriminative Embedding [60.89561661441736]
We propose a novel method for few-shot medical image segmentation.
We construct our few-shot image segmentor using a deep convolutional network trained episodically.
We enhance discriminability of deep embedding to encourage clustering of the feature domains of the same class.
arXiv Detail & Related papers (2020-12-10T04:01:07Z) - Semi-supervised Pathology Segmentation with Disentangled Representations [10.834978793226444]
We propose Anatomy-Pathology Disentanglement Network (APD-Net), a pathology segmentation model that attempts to learn jointly for the first time.
APD-Net can perform pathology segmentation with few annotations, maintain performance with different amounts of supervision, and outperform related deep learning methods.
arXiv Detail & Related papers (2020-09-05T17:07:59Z) - Weakly supervised multiple instance learning histopathological tumor
segmentation [51.085268272912415]
We propose a weakly supervised framework for whole slide imaging segmentation.
We exploit a multiple instance learning scheme for training models.
The proposed framework has been evaluated on multi-locations and multi-centric public data from The Cancer Genome Atlas and the PatchCamelyon dataset.
arXiv Detail & Related papers (2020-04-10T13:12:47Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.