A Novel Supervised Contrastive Regression Framework for Prediction of
Neurocognitive Measures Using Multi-Site Harmonized Diffusion MRI
Tractography
- URL: http://arxiv.org/abs/2210.07411v1
- Date: Thu, 13 Oct 2022 23:24:12 GMT
- Title: A Novel Supervised Contrastive Regression Framework for Prediction of
Neurocognitive Measures Using Multi-Site Harmonized Diffusion MRI
Tractography
- Authors: Tengfei Xue, Fan Zhang, Leo R. Zekelman, Chaoyi Zhang, Yuqian Chen,
Suheyla Cetin-Karayumak, Steve Pieper, William M. Wells, Yogesh Rathi, Nikos
Makris, Weidong Cai, and Lauren J. O'Donnell
- Abstract summary: Supervised Contrastive Regression (SCR) is a simple yet effective method that allows full supervision for contrastive learning in regression tasks.
SCR performs supervised contrastive representation learning by using the absolute difference between continuous regression labels.
SCR improves the accuracy of neurocognitive score prediction compared to other state-of-the-art methods.
- Score: 13.80649748804573
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Neuroimaging-based prediction of neurocognitive measures is valuable for
studying how the brain's structure relates to cognitive function. However, the
accuracy of prediction using popular linear regression models is relatively
low. We propose Supervised Contrastive Regression (SCR), a simple yet effective
method that allows full supervision for contrastive learning in regression
tasks. SCR performs supervised contrastive representation learning by using the
absolute difference between continuous regression labels (i.e. neurocognitive
scores) to determine positive and negative pairs. We apply SCR to analyze a
large-scale dataset including multi-site harmonized diffusion MRI and
neurocognitive data from 8735 participants in the Adolescent Brain Cognitive
Development (ABCD) Study. We extract white matter microstructural measures
using a fine parcellation of white matter tractography into fiber clusters. We
predict three scores related to domains of higher-order cognition (general
cognitive ability, executive function, and learning/memory). To identify
important fiber clusters for prediction of these neurocognitive scores, we
propose a permutation feature importance method for high-dimensional data. We
find that SCR improves the accuracy of neurocognitive score prediction compared
to other state-of-the-art methods. We find that the most predictive fiber
clusters are predominantly located within the superficial white matter and
projection tracts, particularly the superficial frontal white matter and
striato-frontal connections. Overall, our results demonstrate the utility of
contrastive representation learning methods for regression, and in particular
for improving neuroimaging-based prediction of higher-order cognitive
abilities.
Related papers
- Growing Deep Neural Network Considering with Similarity between Neurons [4.32776344138537]
We explore a novel approach of progressively increasing neuron numbers in compact models during training phases.
We propose a method that reduces feature extraction biases and neuronal redundancy by introducing constraints based on neuron similarity distributions.
Results on CIFAR-10 and CIFAR-100 datasets demonstrated accuracy improvement.
arXiv Detail & Related papers (2024-08-23T11:16:37Z) - NeuroExplainer: Fine-Grained Attention Decoding to Uncover Cortical
Development Patterns of Preterm Infants [73.85768093666582]
We propose an explainable geometric deep network dubbed NeuroExplainer.
NeuroExplainer is used to uncover altered infant cortical development patterns associated with preterm birth.
arXiv Detail & Related papers (2023-01-01T12:48:12Z) - Contrastive learning for regression in multi-site brain age prediction [8.985583914175738]
We propose a novel contrastive learning regression loss for robust brain age prediction using MRI scans.
Our method achieves state-of-the-art performance on the OpenBHB challenge, yielding the best generalization capability and robustness to site-related noise.
arXiv Detail & Related papers (2022-11-14T10:07:30Z) - Modeling cognitive load as a self-supervised brain rate with
electroencephalography and deep learning [2.741266294612776]
This research presents a novel self-supervised method for mental workload modelling from EEG data.
The method is a convolutional recurrent neural network trainable with spatially preserving spectral topographic head-maps from EEG data to fit the brain rate variable.
Findings point to the existence of quasi-stable blocks of learnt high-level representations of cognitive activation because they can be induced through convolution and seem not to be dependent on each other over time, intuitively matching the non-stationary nature of brain responses.
arXiv Detail & Related papers (2022-09-21T07:44:21Z) - White Matter Tracts are Point Clouds: Neuropsychological Score
Prediction and Critical Region Localization via Geometric Deep Learning [68.5548609642999]
We propose a deep-learning-based framework for neuropsychological score prediction using white matter tract data.
We represent the arcuate fasciculus (AF) as a point cloud with microstructure measurements at each point.
We improve prediction performance with the proposed Paired-Siamese Loss that utilizes information about differences between continuous neuropsychological scores.
arXiv Detail & Related papers (2022-07-06T02:03:28Z) - Learning Personal Representations from fMRIby Predicting Neurofeedback
Performance [52.77024349608834]
We present a deep neural network method for learning a personal representation for individuals performing a self neuromodulation task, guided by functional MRI (fMRI)
The representation is learned by a self-supervised recurrent neural network, that predicts the Amygdala activity in the next fMRI frame given recent fMRI frames and is conditioned on the learned individual representation.
arXiv Detail & Related papers (2021-12-06T10:16:54Z) - Overcoming the Domain Gap in Contrastive Learning of Neural Action
Representations [60.47807856873544]
A fundamental goal in neuroscience is to understand the relationship between neural activity and behavior.
We generated a new multimodal dataset consisting of the spontaneous behaviors generated by fruit flies.
This dataset and our new set of augmentations promise to accelerate the application of self-supervised learning methods in neuroscience.
arXiv Detail & Related papers (2021-11-29T15:27:51Z) - ICAM-reg: Interpretable Classification and Regression with Feature
Attribution for Mapping Neurological Phenotypes in Individual Scans [3.589107822343127]
We take advantage of recent developments in generative deep learning to develop a method for simultaneous classification, or regression, and feature attribution.
We validate our method on the tasks of Mini-Mental State Examination (MMSE) cognitive test score prediction for the Alzheimer's Disease Neuroimaging Initiative cohort.
We show that the generated FA maps can be used to explain outlier predictions and demonstrate that the inclusion of a regression module improves the disentanglement of the latent space.
arXiv Detail & Related papers (2021-03-03T17:55:14Z) - And/or trade-off in artificial neurons: impact on adversarial robustness [91.3755431537592]
Presence of sufficient number of OR-like neurons in a network can lead to classification brittleness and increased vulnerability to adversarial attacks.
We define AND-like neurons and propose measures to increase their proportion in the network.
Experimental results on the MNIST dataset suggest that our approach holds promise as a direction for further exploration.
arXiv Detail & Related papers (2021-02-15T08:19:05Z) - Neuro-symbolic Neurodegenerative Disease Modeling as Probabilistic
Programmed Deep Kernels [93.58854458951431]
We present a probabilistic programmed deep kernel learning approach to personalized, predictive modeling of neurodegenerative diseases.
Our analysis considers a spectrum of neural and symbolic machine learning approaches.
We run evaluations on the problem of Alzheimer's disease prediction, yielding results that surpass deep learning.
arXiv Detail & Related papers (2020-09-16T15:16:03Z) - Predicting Rate of Cognitive Decline at Baseline Using a Deep Neural
Network with Multidata Analysis [8.118172725250805]
This study investigates whether a machine-learning-based system can predict the rate of cognitive decline in mildly cognitively impaired patients.
We built a predictive model based on a supervised hybrid neural network utilizing a 3-Dimensional Convolutional Neural Network.
arXiv Detail & Related papers (2020-02-24T01:39:17Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.