Computed tomography coronary angiogram images, annotations and
associated data of normal and diseased arteries
- URL: http://arxiv.org/abs/2211.01859v1
- Date: Thu, 3 Nov 2022 14:50:43 GMT
- Title: Computed tomography coronary angiogram images, annotations and
associated data of normal and diseased arteries
- Authors: Ramtin Gharleghi, Dona Adikari, Katy Ellenberger, Mark Webster, Chris
Ellis, Arcot Sowmya, Sze-Yuan Ooi, Susann Beier
- Abstract summary: Computed Tomography Coronary Angiography (CTCA) is a non-invasive method to evaluate coronary artery anatomy and disease.
To our knowledge there is no public dataset that includes centrelines and segmentation of the full coronary tree.
Data can be used for a variety of research purposes, such as 3D printing patient-specific models, development and validation of segmentation algorithms, education and training of medical personnel and in-silico analyses such as testing of medical devices.
- Score: 8.516530964229814
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Computed Tomography Coronary Angiography (CTCA) is a non-invasive method to
evaluate coronary artery anatomy and disease. CTCA is ideal for geometry
reconstruction to create virtual models of coronary arteries. To our knowledge
there is no public dataset that includes centrelines and segmentation of the
full coronary tree.
We provide anonymized CTCA images, voxel-wise annotations and associated data
in the form of centrelines, calcification scores and meshes of the coronary
lumen in 20 normal and 20 diseased cases. Images were obtained along with
patient information with informed, written consent as part of Coronary Atlas
(https://www.coronaryatlas.org/). Cases were classified as normal (zero calcium
score with no signs of stenosis) or diseased (confirmed coronary artery
disease). Manual voxel-wise segmentations by three experts were combined using
majority voting to generate the final annotations.
Provided data can be used for a variety of research purposes, such as 3D
printing patient-specific models, development and validation of segmentation
algorithms, education and training of medical personnel and in-silico analyses
such as testing of medical devices.
Related papers
- AGFA-Net: Attention-Guided and Feature-Aggregated Network for Coronary Artery Segmentation using Computed Tomography Angiography [5.583495103569884]
We propose an attention-guided, feature-aggregated 3D deep network (AGFA-Net) for coronary artery segmentation using CCTA images.
AGFA-Net leverages attention mechanisms and feature refinement modules to capture salient features and enhance segmentation accuracy.
Evaluation on a dataset comprising 1,000 CCTA scans demonstrates AGFA-Net's superior performance, achieving an average Dice coefficient similarity of 86.74% and a Hausdorff distance of 0.23 mm.
arXiv Detail & Related papers (2024-06-13T01:04:47Z) - RadGenome-Chest CT: A Grounded Vision-Language Dataset for Chest CT Analysis [56.57177181778517]
RadGenome-Chest CT is a large-scale, region-guided 3D chest CT interpretation dataset based on CT-RATE.
We leverage the latest powerful universal segmentation and large language models to extend the original datasets.
arXiv Detail & Related papers (2024-04-25T17:11:37Z) - Coronary artery segmentation in non-contrast calcium scoring CT images
using deep learning [2.2687766762329886]
We introduce a deep learning algorithm for segmenting coronary arteries in non-contrast cardiac CT images.
We propose a novel method for manual mesh-to-image registration, which is used to create our test-GT.
The experimental study shows that the trained model has significantly higher accuracy than the GT used for training, and leads to the Dice and clDice metrics close to the interrater variability.
arXiv Detail & Related papers (2024-03-04T23:40:02Z) - Accurate Fine-Grained Segmentation of Human Anatomy in Radiographs via
Volumetric Pseudo-Labeling [66.75096111651062]
We created a large-scale dataset of 10,021 thoracic CTs with 157 labels.
We applied an ensemble of 3D anatomy segmentation models to extract anatomical pseudo-labels.
Our resulting segmentation models demonstrated remarkable performance on CXR.
arXiv Detail & Related papers (2023-06-06T18:01:08Z) - Segmentation and Vascular Vectorization for Coronary Artery by
Geometry-based Cascaded Neural Network [26.88627331841325]
We propose a geometry-based cascaded segmentation method for the coronary artery.
The generated meshes of the coronary artery are continuous and accurate for twisted and sophisticated coronary artery structures.
Our method generates an accurate, intact and smooth coronary artery, devoid of any fragmentations of segmented vessels.
arXiv Detail & Related papers (2023-05-07T07:26:41Z) - O2CTA: Introducing Annotations from OCT to CCTA in Coronary Plaque
Analysis [19.099761377777412]
Coronary CT angiography (CCTA) is widely used for artery imaging and determining the stenosis degree.
It can be settled by invasive optical coherence tomography ( OCT) without much trouble for physicians, but bringing higher costs and potential risks to patients.
We propose a method to handle the O2CTA problem. CCTA scans are first reconstructed into multi-planar reformatted (MPR) images, which agree with OCT images in term of semantic contents.
The artery segment in OCT, which is manually labelled, is then spatially aligned with the entire artery in MPR images via the proposed alignment strategy.
arXiv Detail & Related papers (2023-03-11T09:40:05Z) - ImageCAS: A Large-Scale Dataset and Benchmark for Coronary Artery
Segmentation based on Computed Tomography Angiography Images [13.486031592290258]
Cardiovascular disease (CVD) accounts for about half of non-communicable diseases.
Vessel stenosis in the coronary artery is considered to be the major risk of CVD.
We propose a large-scale dataset for coronary artery segmentation on CTA images.
arXiv Detail & Related papers (2022-11-03T06:37:10Z) - Medical Image Captioning via Generative Pretrained Transformers [57.308920993032274]
We combine two language models, the Show-Attend-Tell and the GPT-3, to generate comprehensive and descriptive radiology records.
The proposed model is tested on two medical datasets, the Open-I, MIMIC-CXR, and the general-purpose MS-COCO.
arXiv Detail & Related papers (2022-09-28T10:27:10Z) - An Algorithm for the Labeling and Interactive Visualization of the
Cerebrovascular System of Ischemic Strokes [59.116811751334225]
VirtualDSA++ is an algorithm designed to segment and label the cerebrovascular tree on CTA scans.
We extend the labeling mechanism for the cerebral arteries to identify occluded vessels.
We present the generic concept of iterative systematic search for pathways on all nodes of said model, which enables new interactive features.
arXiv Detail & Related papers (2022-04-26T14:20:26Z) - AI-based Aortic Vessel Tree Segmentation for Cardiovascular Diseases
Treatment: Status Quo [55.04215695343928]
The aortic vessel tree is composed of the aorta and its branching arteries.
We systematically review computing techniques for the automatic and semi-automatic segmentation of the aortic vessel tree.
arXiv Detail & Related papers (2021-08-06T08:18:28Z) - Dynamic Graph Correlation Learning for Disease Diagnosis with Incomplete
Labels [66.57101219176275]
Disease diagnosis on chest X-ray images is a challenging multi-label classification task.
We propose a Disease Diagnosis Graph Convolutional Network (DD-GCN) that presents a novel view of investigating the inter-dependency among different diseases.
Our method is the first to build a graph over the feature maps with a dynamic adjacency matrix for correlation learning.
arXiv Detail & Related papers (2020-02-26T17:10:48Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.