Spatial Temporal Graph Convolution with Graph Structure Self-learning
for Early MCI Detection
- URL: http://arxiv.org/abs/2211.06161v1
- Date: Fri, 11 Nov 2022 12:29:00 GMT
- Title: Spatial Temporal Graph Convolution with Graph Structure Self-learning
for Early MCI Detection
- Authors: Yunpeng Zhao, Fugen Zhou, Bin Guo, Bo Liu
- Abstract summary: We propose a spatial temporal graph convolutional network with a novel graph structure self-learning mechanism for EMCI detection.
Results on the Alzheimer's Disease Neuroimaging Initiative database show that our method outperforms state-of-the-art approaches.
- Score: 9.11430195887347
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Graph neural networks (GNNs) have been successfully applied to early mild
cognitive impairment (EMCI) detection, with the usage of elaborately designed
features constructed from blood oxygen level-dependent (BOLD) time series.
However, few works explored the feasibility of using BOLD signals directly as
features. Meanwhile, existing GNN-based methods primarily rely on hand-crafted
explicit brain topology as the adjacency matrix, which is not optimal and
ignores the implicit topological organization of the brain. In this paper, we
propose a spatial temporal graph convolutional network with a novel graph
structure self-learning mechanism for EMCI detection. The proposed spatial
temporal graph convolution block directly exploits BOLD time series as input
features, which provides an interesting view for rsfMRI-based preclinical AD
diagnosis. Moreover, our model can adaptively learn the optimal topological
structure and refine edge weights with the graph structure self-learning
mechanism. Results on the Alzheimer's Disease Neuroimaging Initiative (ADNI)
database show that our method outperforms state-of-the-art approaches.
Biomarkers consistent with previous studies can be extracted from the model,
proving the reliable interpretability of our method.
Related papers
- Topology-Aware Graph Augmentation for Predicting Clinical Trajectories in Neurocognitive Disorders [27.280927277680515]
We propose a topology-aware graph augmentation (TGA) framework, comprising a pretext model to train a generalizable encoder and a task-specific model to perform downstream tasks.
Experiments on 1, 688 fMRI scans suggest that TGA outperforms several state-of-the-art methods.
arXiv Detail & Related papers (2024-10-31T19:37:20Z) - Interpretable Spatio-Temporal Embedding for Brain Structural-Effective Network with Ordinary Differential Equation [56.34634121544929]
In this study, we first construct the brain-effective network via the dynamic causal model.
We then introduce an interpretable graph learning framework termed Spatio-Temporal Embedding ODE (STE-ODE)
This framework incorporates specifically designed directed node embedding layers, aiming at capturing the dynamic interplay between structural and effective networks.
arXiv Detail & Related papers (2024-05-21T20:37:07Z) - Spatial-Temporal DAG Convolutional Networks for End-to-End Joint
Effective Connectivity Learning and Resting-State fMRI Classification [42.82118108887965]
Building comprehensive brain connectomes has proved to be fundamental importance in resting-state fMRI (rs-fMRI) analysis.
We model the brain network as a directed acyclic graph (DAG) to discover direct causal connections between brain regions.
We propose Spatial-Temporal DAG Convolutional Network (ST-DAGCN) to jointly infer effective connectivity and classify rs-fMRI time series.
arXiv Detail & Related papers (2023-12-16T04:31:51Z) - Energy-based Out-of-Distribution Detection for Graph Neural Networks [76.0242218180483]
We propose a simple, powerful and efficient OOD detection model for GNN-based learning on graphs, which we call GNNSafe.
GNNSafe achieves up to $17.0%$ AUROC improvement over state-of-the-arts and it could serve as simple yet strong baselines in such an under-developed area.
arXiv Detail & Related papers (2023-02-06T16:38:43Z) - GDBN: a Graph Neural Network Approach to Dynamic Bayesian Network [7.876789380671075]
We propose a graph neural network approach with score-based method aiming at learning a sparse DAG.
We demonstrate methods with graph neural network significantly outperformed other state-of-the-art methods with dynamic bayesian networking inference.
arXiv Detail & Related papers (2023-01-28T02:49:13Z) - DBGDGM: Dynamic Brain Graph Deep Generative Model [63.23390833353625]
Graphs are a natural representation of brain activity derived from functional magnetic imaging (fMRI) data.
It is well known that clusters of anatomical brain regions, known as functional connectivity networks (FCNs), encode temporal relationships which can serve as useful biomarkers for understanding brain function and dysfunction.
Previous works, however, ignore the temporal dynamics of the brain and focus on static graphs.
We propose a dynamic brain graph deep generative model (DBGDGM) which simultaneously clusters brain regions into temporally evolving communities and learns dynamic unsupervised node embeddings.
arXiv Detail & Related papers (2023-01-26T20:45:30Z) - DynDepNet: Learning Time-Varying Dependency Structures from fMRI Data
via Dynamic Graph Structure Learning [58.94034282469377]
We propose DynDepNet, a novel method for learning the optimal time-varying dependency structure of fMRI data induced by downstream prediction tasks.
Experiments on real-world fMRI datasets, for the task of sex classification, demonstrate that DynDepNet achieves state-of-the-art results.
arXiv Detail & Related papers (2022-09-27T16:32:11Z) - Heterogeneous Graph Neural Networks using Self-supervised Reciprocally
Contrastive Learning [102.9138736545956]
Heterogeneous graph neural network (HGNN) is a very popular technique for the modeling and analysis of heterogeneous graphs.
We develop for the first time a novel and robust heterogeneous graph contrastive learning approach, namely HGCL, which introduces two views on respective guidance of node attributes and graph topologies.
In this new approach, we adopt distinct but most suitable attribute and topology fusion mechanisms in the two views, which are conducive to mining relevant information in attributes and topologies separately.
arXiv Detail & Related papers (2022-04-30T12:57:02Z) - Dynamic Adaptive Spatio-temporal Graph Convolution for fMRI Modelling [0.0]
We propose a dynamic adaptivetemporal graph convolution (DASTGCN) model to overcome the shortcomings of pre-defined static correlation-based graph structures.
The proposed approach allows end-to-end inference of dynamic connections between brain regions via layer-wise graph structure learning module.
We evaluate our pipeline on the UKBiobank for age and gender classification tasks from resting-state functional scans.
arXiv Detail & Related papers (2021-09-26T07:19:47Z) - On the spatial attention in Spatio-Temporal Graph Convolutional Networks
for skeleton-based human action recognition [97.14064057840089]
Graphal networks (GCNs) promising performance in skeleton-based human action recognition by modeling a sequence of skeletons as a graph.
Most of the recently proposed G-temporal-based methods improve the performance by learning the graph structure at each layer of the network.
arXiv Detail & Related papers (2020-11-07T19:03:04Z) - Spatio-Temporal Graph Convolution for Resting-State fMRI Analysis [11.85489505372321]
We train a-temporal graph convolutional network (ST-GCN) on short sub-sequences of the BOLD time series to model the non-stationary nature of functional connectivity.
St-GCN is significantly more accurate than common approaches in predicting gender and age based on BOLD signals.
arXiv Detail & Related papers (2020-03-24T01:56:50Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.