Domain Agnostic Pipeline for Retina Vessel Segmentation
- URL: http://arxiv.org/abs/2302.09215v1
- Date: Sat, 18 Feb 2023 02:51:06 GMT
- Title: Domain Agnostic Pipeline for Retina Vessel Segmentation
- Authors: Benjamin Hou
- Abstract summary: We show that it is possible to achieve near state-of-the-art performance by crafting a careful thought pre-processing pipeline.
Our model is able to maintain the same high segmentation performance across different datasets.
- Score: 0.5047410955160032
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Automatic segmentation of retina vessels plays a pivotal role in clinical
diagnosis of prevalent eye diseases, such as, Diabetic Retinopathy or
Age-related Macular Degeneration. Due to the complex construction of blood
vessels, with drastically varying thicknesses, accurate vessel segmentation can
be quite a challenging task. In this work we show that it is possible to
achieve near state-of-the-art performance, by crafting a careful thought
pre-processing pipeline, without having to resort to complex networks and/or
training routines. We also show that our model is able to maintain the same
high segmentation performance across different datasets, very poor quality
fundus images, as well as images of severe pathological cases. Code and models
featured in this paper can be downloaded from
http://github.com/farrell236/retina_segmentation. We also demonstrate the
potential of our model at http://lazarus.ddns.net:8502.
Related papers
- Deep Angiogram: Trivializing Retinal Vessel Segmentation [1.8479315677380455]
We propose a contrastive variational auto-encoder that can filter out irrelevant features and synthesize a latent image, named deep angiogram.
The generalizability of the synthetic network is improved by the contrastive loss that makes the model less sensitive to variations of image contrast and noisy features.
arXiv Detail & Related papers (2023-07-01T06:13:10Z) - Affinity Feature Strengthening for Accurate, Complete and Robust Vessel
Segmentation [48.638327652506284]
Vessel segmentation is crucial in many medical image applications, such as detecting coronary stenoses, retinal vessel diseases and brain aneurysms.
We present a novel approach, the affinity feature strengthening network (AFN), which jointly models geometry and refines pixel-wise segmentation features using a contrast-insensitive, multiscale affinity approach.
arXiv Detail & Related papers (2022-11-12T05:39:17Z) - Segmentation of Blood Vessels, Optic Disc Localization, Detection of
Exudates and Diabetic Retinopathy Diagnosis from Digital Fundus Images [0.0]
Diabetic Retinopathy (DR) is a complication of long-standing, unchecked diabetes and one of the leading causes of blindness in the world.
This paper focuses on improved and robust methods to extract some of the features of DR, viz. Blood Vessels and Exudates.
The vessel segmentation, optic disc localization and DCNN achieve accuracies of 95.93%, 98.77% and 75.73% respectively.
arXiv Detail & Related papers (2022-07-09T22:26:04Z) - Assessing glaucoma in retinal fundus photographs using Deep Feature
Consistent Variational Autoencoders [63.391402501241195]
glaucoma is challenging to detect since it remains asymptomatic until the symptoms are severe.
Early identification of glaucoma is generally made based on functional, structural, and clinical assessments.
Deep learning methods have partially solved this dilemma by bypassing the marker identification stage and analyzing high-level information directly to classify the data.
arXiv Detail & Related papers (2021-10-04T16:06:49Z) - FetReg: Placental Vessel Segmentation and Registration in Fetoscopy
Challenge Dataset [57.30136148318641]
Fetoscopy laser photocoagulation is a widely used procedure for the treatment of Twin-to-Twin Transfusion Syndrome (TTTS)
This may lead to increased procedural time and incomplete ablation, resulting in persistent TTTS.
Computer-assisted intervention may help overcome these challenges by expanding the fetoscopic field of view through video mosaicking and providing better visualization of the vessel network.
We present a large-scale multi-centre dataset for the development of generalized and robust semantic segmentation and video mosaicking algorithms for the fetal environment with a focus on creating drift-free mosaics from long duration fetoscopy videos.
arXiv Detail & Related papers (2021-06-10T17:14:27Z) - Transfer Learning Through Weighted Loss Function and Group Normalization
for Vessel Segmentation from Retinal Images [0.0]
The vascular structure of blood vessels is important in diagnosing retinal conditions such as glaucoma and diabetic retinopathy.
We propose an approach for segmenting retinal vessels that uses deep learning along with transfer learning.
Our approach results in greater segmentation accuracy than other approaches.
arXiv Detail & Related papers (2020-12-16T20:34:48Z) - Rethinking the Extraction and Interaction of Multi-Scale Features for
Vessel Segmentation [53.187152856583396]
We propose a novel deep learning model called PC-Net to segment retinal vessels and major arteries in 2D fundus image and 3D computed tomography angiography (CTA) scans.
In PC-Net, the pyramid squeeze-and-excitation (PSE) module introduces spatial information to each convolutional block, boosting its ability to extract more effective multi-scale features.
arXiv Detail & Related papers (2020-10-09T08:22:54Z) - Robust Retinal Vessel Segmentation from a Data Augmentation Perspective [14.768009562830004]
We propose two new data augmentation modules, namely, channel-wise random Gamma correction and channel-wise random vessel augmentation.
With the additional training samples generated by applying these two modules sequentially, a model could learn more invariant and discriminating features.
Experimental results on both real-world and synthetic datasets demonstrate that our method can improve the performance and robustness of a classic convolutional neural network architecture.
arXiv Detail & Related papers (2020-07-31T07:37:14Z) - Towards Unsupervised Learning for Instrument Segmentation in Robotic
Surgery with Cycle-Consistent Adversarial Networks [54.00217496410142]
We propose an unpaired image-to-image translation where the goal is to learn the mapping between an input endoscopic image and a corresponding annotation.
Our approach allows to train image segmentation models without the need to acquire expensive annotations.
We test our proposed method on Endovis 2017 challenge dataset and show that it is competitive with supervised segmentation methods.
arXiv Detail & Related papers (2020-07-09T01:39:39Z) - Dense Residual Network for Retinal Vessel Segmentation [8.778525346264466]
We propose an efficient method to segment blood vessels in Scanning Laser Ophthalmoscopy retinal images.
Inspired by U-Net, "feature map reuse" and residual learning, we propose a deep dense residual network structure called DRNet.
Our method achieves the state-of-the-art performance even without data augmentation.
arXiv Detail & Related papers (2020-04-07T20:42:13Z) - Retinopathy of Prematurity Stage Diagnosis Using Object Segmentation and
Convolutional Neural Networks [68.96150598294072]
Retinopathy of Prematurity (ROP) is an eye disorder primarily affecting premature infants with lower weights.
It causes proliferation of vessels in the retina and could result in vision loss and, eventually, retinal detachment, leading to blindness.
In recent years, there has been a significant effort to automate the diagnosis using deep learning.
This paper builds upon the success of previous models and develops a novel architecture, which combines object segmentation and convolutional neural networks (CNN)
Our proposed system first trains an object segmentation model to identify the demarcation line at a pixel level and adds the resulting mask as an additional "color" channel in
arXiv Detail & Related papers (2020-04-03T14:07:41Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.