ICoNIK: Generating Respiratory-Resolved Abdominal MR Reconstructions
Using Neural Implicit Representations in k-Space
- URL: http://arxiv.org/abs/2308.08830v1
- Date: Thu, 17 Aug 2023 07:46:50 GMT
- Title: ICoNIK: Generating Respiratory-Resolved Abdominal MR Reconstructions
Using Neural Implicit Representations in k-Space
- Authors: Veronika Spieker, Wenqi Huang, Hannah Eichhorn, Jonathan Stelter,
Kilian Weiss, Veronika A. Zimmer, Rickmer F. Braren, Dimitrios C. Karampinos,
Kerstin Hammernik, Julia A. Schnabel
- Abstract summary: We propose to generate blurring-free motion-resolved abdominal reconstructions by learning a neural implicit representation directly in k-space.
To aid the regularization of sparsely sampled regions, we introduce an additional informed correction layer (ICo)
Our proposed generative reconstruction methods, NIK and ICoNIK, outperform standard motion-resolved reconstruction techniques.
- Score: 3.72607026411383
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Motion-resolved reconstruction for abdominal magnetic resonance imaging (MRI)
remains a challenge due to the trade-off between residual motion blurring
caused by discretized motion states and undersampling artefacts. In this work,
we propose to generate blurring-free motion-resolved abdominal reconstructions
by learning a neural implicit representation directly in k-space (NIK). Using
measured sampling points and a data-derived respiratory navigator signal, we
train a network to generate continuous signal values. To aid the regularization
of sparsely sampled regions, we introduce an additional informed correction
layer (ICo), which leverages information from neighboring regions to correct
NIK's prediction. Our proposed generative reconstruction methods, NIK and
ICoNIK, outperform standard motion-resolved reconstruction techniques and
provide a promising solution to address motion artefacts in abdominal MRI.
Related papers
- Self-Supervised k-Space Regularization for Motion-Resolved Abdominal MRI Using Neural Implicit k-Space Representation [3.829690053412406]
We introduce the concept of parallel imaging-inspired self-consistency (PISCO)
We incorporate self-supervised k-space regularization enforcing a consistent neighborhood relationship.
At no additional data cost, the proposed regularization significantly improves neural implicit k-space reconstructions on simulated data.
arXiv Detail & Related papers (2024-04-12T09:31:11Z) - Volumetric Reconstruction Resolves Off-Resonance Artifacts in Static and
Dynamic PROPELLER MRI [76.60362295758596]
Off-resonance artifacts in magnetic resonance imaging (MRI) are visual distortions that occur when the actual resonant frequencies of spins within the imaging volume differ from the expected frequencies used to encode spatial information.
We propose to resolve these artifacts by lifting the 2D MRI reconstruction problem to 3D, introducing an additional "spectral" dimension to model this off-resonance.
arXiv Detail & Related papers (2023-11-22T05:44:51Z) - Neural Spherical Harmonics for structurally coherent continuous
representation of diffusion MRI signal [0.3277163122167433]
We present a novel way to model diffusion magnetic resonance imaging (dMRI) datasets, that benefits from the structural coherence of the human brain.
Current methods model the dMRI signal in individual voxels, disregarding the intervoxel coherence that is present.
We use a neural network to parameterize a spherical harmonics series to represent the dMRI signal of a single subject from the Human Connectome Project dataset.
arXiv Detail & Related papers (2023-08-16T08:28:01Z) - Spatiotemporal implicit neural representation for unsupervised dynamic
MRI reconstruction [11.661657147506519]
Implicit Neuraltruth (INR) has appeared as powerful DL-based tool for solving the inverse problem.
In this work, we proposed an INR-based method to improve dynamic MRI reconstruction from highly undersampled k-space data.
The proposed INR represents the dynamic MRI images as an implicit function and encodes them into neural networks.
arXiv Detail & Related papers (2022-12-31T05:43:21Z) - Physics-informed compressed sensing for PC-MRI: an inverse Navier-Stokes
problem [78.20667552233989]
We formulate a physics-informed compressed sensing (PICS) method for the reconstruction of velocity fields from noisy and sparse magnetic resonance signals.
We find that the method is capable of reconstructing and segmenting the velocity fields from sparsely-sampled signals.
arXiv Detail & Related papers (2022-07-04T14:51:59Z) - Learning Optimal K-space Acquisition and Reconstruction using
Physics-Informed Neural Networks [46.751292014516025]
Deep neural networks have been applied to reconstruct undersampled k-space data and have shown improved reconstruction performance.
This work proposes a novel framework to learn k-space sampling trajectories by considering it as an Ordinary Differential Equation (ODE) problem.
Experiments were conducted on different in-viv datasets (textite.g., brain and knee images) acquired with different sequences.
arXiv Detail & Related papers (2022-04-05T20:28:42Z) - A Long Short-term Memory Based Recurrent Neural Network for
Interventional MRI Reconstruction [50.1787181309337]
We propose a convolutional long short-term memory (Conv-LSTM) based recurrent neural network (RNN), or ConvLR, to reconstruct interventional images with golden-angle radial sampling.
The proposed algorithm has the potential to achieve real-time i-MRI for DBS and can be used for general purpose MR-guided intervention.
arXiv Detail & Related papers (2022-03-28T14:03:45Z) - Towards performant and reliable undersampled MR reconstruction via
diffusion model sampling [67.73698021297022]
DiffuseRecon is a novel diffusion model-based MR reconstruction method.
It guides the generation process based on the observed signals.
It does not require additional training on specific acceleration factors.
arXiv Detail & Related papers (2022-03-08T02:25:38Z) - Motion Correction and Volumetric Reconstruction for Fetal Functional
Magnetic Resonance Imaging Data [3.690756997172894]
Motion correction is an essential preprocessing step in functional Magnetic Resonance Imaging (fMRI) of the fetal brain.
Current motion correction approaches for fetal fMRI choose a single 3D volume from a specific acquisition timepoint.
We propose a novel framework, which estimates a high-resolution reference volume by using outlier-robust motion correction.
arXiv Detail & Related papers (2022-02-11T19:11:16Z) - Multi-Modal MRI Reconstruction with Spatial Alignment Network [51.74078260367654]
In clinical practice, magnetic resonance imaging (MRI) with multiple contrasts is usually acquired in a single study.
Recent researches demonstrate that, considering the redundancy between different contrasts or modalities, a target MRI modality under-sampled in the k-space can be better reconstructed with the helps from a fully-sampled sequence.
In this paper, we integrate the spatial alignment network with reconstruction, to improve the quality of the reconstructed target modality.
arXiv Detail & Related papers (2021-08-12T08:46:35Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.