Prediction of Diblock Copolymer Morphology via Machine Learning
- URL: http://arxiv.org/abs/2308.16886v1
- Date: Thu, 31 Aug 2023 17:45:34 GMT
- Title: Prediction of Diblock Copolymer Morphology via Machine Learning
- Authors: Hyun Park, Boyuan Yu, Juhae Park, Ge Sun, Emad Tajkhorshid, Juan J. de
Pablo, and Ludwig Schneider
- Abstract summary: A machine learning approach is presented to accelerate the computation of block polymer morphology evolution over long timescales.
In contrast to empirical annihilation models, the proposed approach learns on the continuumally driven defect processes directly from particle-based simulations.
This work has implications for directed self-assembly and materials design in micro-electronics, battery materials, and membranes.
- Score: 0.0
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: A machine learning approach is presented to accelerate the computation of
block polymer morphology evolution for large domains over long timescales. The
strategy exploits the separation of characteristic times between coarse-grained
particle evolution on the monomer scale and slow morphological evolution over
mesoscopic scales. In contrast to empirical continuum models, the proposed
approach learns stochastically driven defect annihilation processes directly
from particle-based simulations. A UNet architecture that respects different
boundary conditions is adopted, thereby allowing periodic and fixed substrate
boundary conditions of arbitrary shape. Physical concepts are also introduced
via the loss function and symmetries are incorporated via data augmentation.
The model is validated using three different use cases. Explainable artificial
intelligence methods are applied to visualize the morphology evolution over
time. This approach enables the generation of large system sizes and long
trajectories to investigate defect densities and their evolution under
different types of confinement. As an application, we demonstrate the
importance of accessing late-stage morphologies for understanding particle
diffusion inside a single block. This work has implications for directed
self-assembly and materials design in micro-electronics, battery materials, and
membranes.
Related papers
- Graph Fourier Neural ODEs: Bridging Spatial and Temporal Multiscales in Molecular Dynamics [39.412937539709844]
We present a novel framework that jointly models spatial and temporal multiscale interactions in molecular dynamics.
We evaluate our model on the MD17 dataset, demonstrating consistent performance improvements over state-of-the-art baselines.
arXiv Detail & Related papers (2024-11-03T15:10:48Z) - Molecular Conformation Generation via Shifting Scores [21.986775283620883]
We propose a novel molecular conformation generation approach driven by the observation that the disintegration of a molecule can be viewed as casting increasing force fields to its composing atoms.
The corresponding generative modeling ensures a feasible inter-atomic distance geometry and exhibits time reversibility.
arXiv Detail & Related papers (2023-09-12T07:39:43Z) - Gramian Angular Fields for leveraging pretrained computer vision models
with anomalous diffusion trajectories [0.9012198585960443]
We present a new data-driven method for working with diffusive trajectories.
This method utilizes Gramian Angular Fields (GAF) to encode one-dimensional trajectories as images.
We leverage two well-established pre-trained computer-vision models, ResNet and MobileNet, to characterize the underlying diffusive regime.
arXiv Detail & Related papers (2023-09-02T17:22:45Z) - Geometric Neural Diffusion Processes [55.891428654434634]
We extend the framework of diffusion models to incorporate a series of geometric priors in infinite-dimension modelling.
We show that with these conditions, the generative functional model admits the same symmetry.
arXiv Detail & Related papers (2023-07-11T16:51:38Z) - Implicit Geometry and Interaction Embeddings Improve Few-Shot Molecular
Property Prediction [53.06671763877109]
We develop molecular embeddings that encode complex molecular characteristics to improve the performance of few-shot molecular property prediction.
Our approach leverages large amounts of synthetic data, namely the results of molecular docking calculations.
On multiple molecular property prediction benchmarks, training from the embedding space substantially improves Multi-Task, MAML, and Prototypical Network few-shot learning performance.
arXiv Detail & Related papers (2023-02-04T01:32:40Z) - GeoDiff: a Geometric Diffusion Model for Molecular Conformation
Generation [102.85440102147267]
We propose a novel generative model named GeoDiff for molecular conformation prediction.
We show that GeoDiff is superior or comparable to existing state-of-the-art approaches.
arXiv Detail & Related papers (2022-03-06T09:47:01Z) - Level set based particle filter driven by optical flow: an application
to track the salt boundary from X-ray CT time-series [0.0]
This research aims to determine the non-linear deformation of the salt boundary over time using a parallelized, filtering approach from x-ray computed tomography (CT) image time series.
This work represents a first step towards bringing together physical modeling and advanced image processing methods where model uncertainty is taken into account.
arXiv Detail & Related papers (2022-02-17T15:46:26Z) - A deep learning driven pseudospectral PCE based FFT homogenization
algorithm for complex microstructures [68.8204255655161]
It is shown that the proposed method is able to predict central moments of interest while being magnitudes faster to evaluate than traditional approaches.
It is shown, that the proposed method is able to predict central moments of interest while being magnitudes faster to evaluate than traditional approaches.
arXiv Detail & Related papers (2021-10-26T07:02:14Z) - GeoMol: Torsional Geometric Generation of Molecular 3D Conformer
Ensembles [60.12186997181117]
Prediction of a molecule's 3D conformer ensemble from the molecular graph holds a key role in areas of cheminformatics and drug discovery.
Existing generative models have several drawbacks including lack of modeling important molecular geometry elements.
We propose GeoMol, an end-to-end, non-autoregressive and SE(3)-invariant machine learning approach to generate 3D conformers.
arXiv Detail & Related papers (2021-06-08T14:17:59Z) - Learning Neural Generative Dynamics for Molecular Conformation
Generation [89.03173504444415]
We study how to generate molecule conformations (textiti.e., 3D structures) from a molecular graph.
We propose a novel probabilistic framework to generate valid and diverse conformations given a molecular graph.
arXiv Detail & Related papers (2021-02-20T03:17:58Z) - Physics-Constrained Predictive Molecular Latent Space Discovery with
Graph Scattering Variational Autoencoder [0.0]
We develop a molecular generative model based on variational inference and graph theory in the small data regime.
The model's performance is evaluated by generating molecules with desired target properties.
arXiv Detail & Related papers (2020-09-29T09:05:27Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.