Dual-Reference Source-Free Active Domain Adaptation for Nasopharyngeal
Carcinoma Tumor Segmentation across Multiple Hospitals
- URL: http://arxiv.org/abs/2309.13401v1
- Date: Sat, 23 Sep 2023 15:26:27 GMT
- Title: Dual-Reference Source-Free Active Domain Adaptation for Nasopharyngeal
Carcinoma Tumor Segmentation across Multiple Hospitals
- Authors: Hongqiu Wang, Jian Chen, Shichen Zhang, Yuan He, Jinfeng Xu, Mengwan
Wu, Jinlan He, Wenjun Liao, Xiangde Luo
- Abstract summary: Nasopharyngeal carcinoma (NPC) is a prevalent and clinically significant malignancy that predominantly impacts the head and neck area.
We propose a novel Sourece-Free Active Domain Adaptation (SFADA) framework to facilitate domain adaptation for the Gross Tumor Volume (GTV) segmentation task.
We collect a large-scale clinical dataset comprising 1057 NPC patients from five hospitals to validate our approach.
- Score: 9.845637899896365
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Nasopharyngeal carcinoma (NPC) is a prevalent and clinically significant
malignancy that predominantly impacts the head and neck area. Precise
delineation of the Gross Tumor Volume (GTV) plays a pivotal role in ensuring
effective radiotherapy for NPC. Despite recent methods that have achieved
promising results on GTV segmentation, they are still limited by lacking
carefully-annotated data and hard-to-access data from multiple hospitals in
clinical practice. Although some unsupervised domain adaptation (UDA) has been
proposed to alleviate this problem, unconditionally mapping the distribution
distorts the underlying structural information, leading to inferior
performance. To address this challenge, we devise a novel Sourece-Free Active
Domain Adaptation (SFADA) framework to facilitate domain adaptation for the GTV
segmentation task. Specifically, we design a dual reference strategy to select
domain-invariant and domain-specific representative samples from a specific
target domain for annotation and model fine-tuning without relying on
source-domain data. Our approach not only ensures data privacy but also reduces
the workload for oncologists as it just requires annotating a few
representative samples from the target domain and does not need to access the
source data. We collect a large-scale clinical dataset comprising 1057 NPC
patients from five hospitals to validate our approach. Experimental results
show that our method outperforms the UDA methods and achieves comparable
results to the fully supervised upper bound, even with few annotations,
highlighting the significant medical utility of our approach. In addition,
there is no public dataset about multi-center NPC segmentation, we will release
code and dataset for future research.
Related papers
- An Uncertainty-guided Tiered Self-training Framework for Active Source-free Domain Adaptation in Prostate Segmentation [10.061310311839856]
Source-free Domain Adaptation (SFDA) is a promising technique to adapt deep segmentation models to address privacy and security concerns.
We propose a novel Uncertainty-guided Tiered Self-training (UGTST) framework to achieve stable domain adaptation.
arXiv Detail & Related papers (2024-07-03T08:13:16Z) - Domain Adaptation of Echocardiography Segmentation Via Reinforcement Learning [4.850478245721347]
We introduce RL4Seg, an innovative reinforcement learning framework that reduces the need to otherwise incorporate large expertly annotated datasets in the target domain.
Using a target dataset of 10,000 unannotated 2D echocardiographic images, RL4Seg achieves 99% anatomical validity on a subset of 220 expert-validated subjects from the target domain.
arXiv Detail & Related papers (2024-06-25T19:26:39Z) - Domain-invariant Clinical Representation Learning by Bridging Data
Distribution Shift across EMR Datasets [16.317118701435742]
An effective prognostic model is expected to assist doctors in making right diagnosis and designing personalized treatment plan.
In the early stage of a disease, limited data collection and clinical experiences, plus the concern out of privacy and ethics, may result in restricted data availability for reference.
This article introduces a domain-invariant representation learning method to build a transition model from source dataset to target dataset.
arXiv Detail & Related papers (2023-10-11T18:32:21Z) - Cross-Dataset Adaptation for Instrument Classification in Cataract
Surgery Videos [54.1843419649895]
State-of-the-art models, which perform this task well on a particular dataset, perform poorly when tested on another dataset.
We propose a novel end-to-end Unsupervised Domain Adaptation (UDA) method called the Barlow Adaptor.
In addition, we introduce a novel loss called the Barlow Feature Alignment Loss (BFAL) which aligns features across different domains.
arXiv Detail & Related papers (2023-07-31T18:14:18Z) - Source-Free Domain Adaptation for Medical Image Segmentation via
Prototype-Anchored Feature Alignment and Contrastive Learning [57.43322536718131]
We present a two-stage source-free domain adaptation (SFDA) framework for medical image segmentation.
In the prototype-anchored feature alignment stage, we first utilize the weights of the pre-trained pixel-wise classifier as source prototypes.
Then, we introduce the bi-directional transport to align the target features with class prototypes by minimizing its expected cost.
arXiv Detail & Related papers (2023-07-19T06:07:12Z) - Multi-scale Feature Alignment for Continual Learning of Unlabeled
Domains [3.9498537297431167]
generative feature-driven image replay in conjunction with a dual-purpose discriminator enables the generation of images with realistic features for replay.
We present detailed ablation experiments studying our proposed method components and demonstrate a possible use-case of our continual UDA method for an unsupervised patch-based segmentation task.
arXiv Detail & Related papers (2023-02-02T18:19:01Z) - Unsupervised Domain Adaptation for Dysarthric Speech Detection via
Domain Adversarial Training and Mutual Information Minimization [52.82138296332476]
This paper makes a first attempt to formulate cross-domain Dysarthric speech detection (DSD) as an unsupervised domain adaptation problem.
We propose a multi-task learning strategy, including dysarthria presence classification (DPC), domain adversarial training ( DAT) and mutual information minimization (MIM)
Experiments show that the incorporation of UDA attains absolute increases of 22.2% and 20.0% respectively in utterance-level weighted average recall and speaker-level accuracy.
arXiv Detail & Related papers (2021-06-18T13:34:36Z) - Cross-Modality Brain Tumor Segmentation via Bidirectional
Global-to-Local Unsupervised Domain Adaptation [61.01704175938995]
In this paper, we propose a novel Bidirectional Global-to-Local (BiGL) adaptation framework under a UDA scheme.
Specifically, a bidirectional image synthesis and segmentation module is proposed to segment the brain tumor.
The proposed method outperforms several state-of-the-art unsupervised domain adaptation methods by a large margin.
arXiv Detail & Related papers (2021-05-17T10:11:45Z) - An Uncertainty-Driven GCN Refinement Strategy for Organ Segmentation [53.425900196763756]
We propose a segmentation refinement method based on uncertainty analysis and graph convolutional networks.
We employ the uncertainty levels of the convolutional network in a particular input volume to formulate a semi-supervised graph learning problem.
We show that our method outperforms the state-of-the-art CRF refinement method by improving the dice score by 1% for the pancreas and 2% for spleen.
arXiv Detail & Related papers (2020-12-06T18:55:07Z) - Harnessing Uncertainty in Domain Adaptation for MRI Prostate Lesion
Segmentation [15.919637739630353]
We consider translating from mp-MRI to VERDICT, a richer MRI modality involving an acquisition optimized protocol for cancer characterization.
Our results show that this allows us to extract systematically better image representations for the target domain, when used in tandem with both simple, CycleGAN-based baselines.
arXiv Detail & Related papers (2020-10-14T21:30:27Z) - PraNet: Parallel Reverse Attention Network for Polyp Segmentation [155.93344756264824]
We propose a parallel reverse attention network (PraNet) for accurate polyp segmentation in colonoscopy images.
We first aggregate the features in high-level layers using a parallel partial decoder (PPD)
In addition, we mine the boundary cues using a reverse attention (RA) module, which is able to establish the relationship between areas and boundary cues.
arXiv Detail & Related papers (2020-06-13T08:13:43Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.