IMITATE: Clinical Prior Guided Hierarchical Vision-Language Pre-training
- URL: http://arxiv.org/abs/2310.07355v3
- Date: Wed, 1 May 2024 10:06:22 GMT
- Title: IMITATE: Clinical Prior Guided Hierarchical Vision-Language Pre-training
- Authors: Che Liu, Sibo Cheng, Miaojing Shi, Anand Shah, Wenjia Bai, Rossella Arcucci,
- Abstract summary: We propose a novel framework named IMITATE to learn the structure information from medical reports with hierarchical vision-language alignment.
The framework derives multi-level visual features from the chest X-ray (CXR) images and separately aligns these features with the descriptive and the conclusive text encoded in the hierarchical medical report.
- Score: 15.04212780946932
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: In the field of medical Vision-Language Pre-training (VLP), significant efforts have been devoted to deriving text and image features from both clinical reports and associated medical images. However, most existing methods may have overlooked the opportunity in leveraging the inherent hierarchical structure of clinical reports, which are generally split into `findings' for descriptive content and `impressions' for conclusive observation. Instead of utilizing this rich, structured format, current medical VLP approaches often simplify the report into either a unified entity or fragmented tokens. In this work, we propose a novel clinical prior guided VLP framework named IMITATE to learn the structure information from medical reports with hierarchical vision-language alignment. The framework derives multi-level visual features from the chest X-ray (CXR) images and separately aligns these features with the descriptive and the conclusive text encoded in the hierarchical medical report. Furthermore, a new clinical-informed contrastive loss is introduced for cross-modal learning, which accounts for clinical prior knowledge in formulating sample correlations in contrastive learning. The proposed model, IMITATE, outperforms baseline VLP methods across six different datasets, spanning five medical imaging downstream tasks. Comprehensive experimental results highlight the advantages of integrating the hierarchical structure of medical reports for vision-language alignment.
Related papers
- SGSeg: Enabling Text-free Inference in Language-guided Segmentation of Chest X-rays via Self-guidance [10.075820470715374]
We propose a self-guided segmentation framework (SGSeg) that leverages language guidance for training (multi-modal) while enabling text-free inference (uni-modal)
We exploit the critical location information of both pulmonary and pathological structures depicted in the text reports and introduce a novel localization-enhanced report generation (LERG) module to generate clinical reports for self-guidance.
Our LERG integrates an object detector and a location-based attention aggregator, weakly-supervised by a location-aware pseudo-label extraction module.
arXiv Detail & Related papers (2024-09-07T08:16:00Z) - Prompt-Guided Generation of Structured Chest X-Ray Report Using a Pre-trained LLM [5.766695041882696]
We introduce a prompt-guided approach to generate structured chest X-ray reports using a pre-trained large language model (LLM)
First, we identify anatomical regions in chest X-rays to generate focused sentences that center on key visual elements.
We also convert the detected anatomy into textual prompts conveying anatomical comprehension to the LLM.
arXiv Detail & Related papers (2024-04-17T09:45:43Z) - Hierarchical Text-to-Vision Self Supervised Alignment for Improved Histopathology Representation Learning [64.1316997189396]
We present a novel language-tied self-supervised learning framework, Hierarchical Language-tied Self-Supervision (HLSS) for histopathology images.
Our resulting model achieves state-of-the-art performance on two medical imaging benchmarks, OpenSRH and TCGA datasets.
arXiv Detail & Related papers (2024-03-21T17:58:56Z) - Eye-gaze Guided Multi-modal Alignment for Medical Representation Learning [65.54680361074882]
Eye-gaze Guided Multi-modal Alignment (EGMA) framework harnesses eye-gaze data for better alignment of medical visual and textual features.
We conduct downstream tasks of image classification and image-text retrieval on four medical datasets.
arXiv Detail & Related papers (2024-03-19T03:59:14Z) - Knowledge Graph Embeddings for Multi-Lingual Structured Representations
of Radiology Reports [40.606143019674654]
We introduce a novel light-weight graph-based embedding method specifically catering radiology reports.
It takes into account the structure and composition of the report, while also connecting medical terms in the report.
We show the use of this embedding on two tasks namely disease classification of X-ray reports and image classification.
arXiv Detail & Related papers (2023-09-02T11:46:41Z) - Vision-Language Modelling For Radiological Imaging and Reports In The
Low Data Regime [70.04389979779195]
This paper explores training medical vision-language models (VLMs) where the visual and language inputs are embedded into a common space.
We explore several candidate methods to improve low-data performance, including adapting generic pre-trained models to novel image and text domains.
Using text-to-image retrieval as a benchmark, we evaluate the performance of these methods with variable sized training datasets of paired chest X-rays and radiological reports.
arXiv Detail & Related papers (2023-03-30T18:20:00Z) - Learning to Exploit Temporal Structure for Biomedical Vision-Language
Processing [53.89917396428747]
Self-supervised learning in vision-language processing exploits semantic alignment between imaging and text modalities.
We explicitly account for prior images and reports when available during both training and fine-tuning.
Our approach, named BioViL-T, uses a CNN-Transformer hybrid multi-image encoder trained jointly with a text model.
arXiv Detail & Related papers (2023-01-11T16:35:33Z) - Multi-Granularity Cross-modal Alignment for Generalized Medical Visual
Representation Learning [24.215619918283462]
We present a novel framework for learning medical visual representations directly from paired radiology reports.
Our framework harnesses the naturally exhibited semantic correspondences between medical image and radiology reports at three different levels.
arXiv Detail & Related papers (2022-10-12T09:31:39Z) - Cross-modal Clinical Graph Transformer for Ophthalmic Report Generation [116.87918100031153]
We propose a Cross-modal clinical Graph Transformer (CGT) for ophthalmic report generation (ORG)
CGT injects clinical relation triples into the visual features as prior knowledge to drive the decoding procedure.
Experiments on the large-scale FFA-IR benchmark demonstrate that the proposed CGT is able to outperform previous benchmark methods.
arXiv Detail & Related papers (2022-06-04T13:16:30Z) - Self-supervised Answer Retrieval on Clinical Notes [68.87777592015402]
We introduce CAPR, a rule-based self-supervision objective for training Transformer language models for domain-specific passage matching.
We apply our objective in four Transformer-based architectures: Contextual Document Vectors, Bi-, Poly- and Cross-encoders.
We report that CAPR outperforms strong baselines in the retrieval of domain-specific passages and effectively generalizes across rule-based and human-labeled passages.
arXiv Detail & Related papers (2021-08-02T10:42:52Z) - A Comparison of Pre-trained Vision-and-Language Models for Multimodal
Representation Learning across Medical Images and Reports [5.074841553282345]
In this study, we adopt four pre-trained V+L models to learn multimodal representation from MIMIC-CXR radiographs and associated reports.
In comparison to the pioneering CNN-RNN model, the joint embedding learned by pre-trained V+L models demonstrate performance improvement in the thoracic findings classification task.
arXiv Detail & Related papers (2020-09-03T09:00:47Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.