JSMoCo: Joint Coil Sensitivity and Motion Correction in Parallel MRI
with a Self-Calibrating Score-Based Diffusion Model
- URL: http://arxiv.org/abs/2310.09625v1
- Date: Sat, 14 Oct 2023 17:11:25 GMT
- Title: JSMoCo: Joint Coil Sensitivity and Motion Correction in Parallel MRI
with a Self-Calibrating Score-Based Diffusion Model
- Authors: Lixuan Chen, Xuanyu Tian, Jiangjie Wu, Ruimin Feng, Guoyan Lao, Yuyao
Zhang, Hongjiang Wei
- Abstract summary: We propose to jointly estimate the motion parameters and coil sensitivity maps for under-sampled MRI reconstruction.
Our method is capable of reconstructing high-quality MRI images from sparsely-sampled k-space data, even affected by motion.
- Score: 3.3053426917821134
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Magnetic Resonance Imaging (MRI) stands as a powerful modality in clinical
diagnosis. However, it is known that MRI faces challenges such as long
acquisition time and vulnerability to motion-induced artifacts. Despite the
success of many existing motion correction algorithms, there has been limited
research focused on correcting motion artifacts on the estimated coil
sensitivity maps for fast MRI reconstruction. Existing methods might suffer
from severe performance degradation due to error propagation resulting from the
inaccurate coil sensitivity maps estimation. In this work, we propose to
jointly estimate the motion parameters and coil sensitivity maps for
under-sampled MRI reconstruction, referred to as JSMoCo. However, joint
estimation of motion parameters and coil sensitivities results in a highly
ill-posed inverse problem due to an increased number of unknowns. To address
this, we introduce score-based diffusion models as powerful priors and leverage
the MRI physical principles to efficiently constrain the solution space for
this optimization problem. Specifically, we parameterize the rigid motion as
three trainable variables and model coil sensitivity maps as polynomial
functions. Leveraging the physical knowledge, we then employ Gibbs sampler for
joint estimation, ensuring system consistency between sensitivity maps and
desired images, avoiding error propagation from pre-estimated sensitivity maps
to the reconstructed images. We conduct comprehensive experiments to evaluate
the performance of JSMoCo on the fastMRI dataset. The results show that our
method is capable of reconstructing high-quality MRI images from
sparsely-sampled k-space data, even affected by motion. It achieves this by
accurately estimating both motion parameters and coil sensitivities,
effectively mitigating motion-related challenges during MRI reconstruction.
Related papers
- A Unified Model for Compressed Sensing MRI Across Undersampling Patterns [69.19631302047569]
Deep neural networks have shown great potential for reconstructing high-fidelity images from undersampled measurements.
Our model is based on neural operators, a discretization-agnostic architecture.
Our inference speed is also 1,400x faster than diffusion methods.
arXiv Detail & Related papers (2024-10-05T20:03:57Z) - IM-MoCo: Self-supervised MRI Motion Correction using Motion-Guided Implicit Neural Representations [2.2265038612930663]
Motion artifacts in Magnetic Resonance Imaging (MRI) arise due to relatively long acquisition times.
Traditional motion correction methods often fail to address severe motion, leading to distorted and unreliable results.
We present an instance-wise motion correction pipeline that leverages motion-guided Implicit Neural Representations (INRs)
Our method improves classification outcomes by at least $+1.5$ accuracy percentage points compared to motion-corrupted images.
arXiv Detail & Related papers (2024-07-03T10:14:33Z) - Attention-aware non-rigid image registration for accelerated MR imaging [10.47044784972188]
We introduce an attention-aware deep learning-based framework that can perform non-rigid pairwise registration for fully sampled and accelerated MRI.
We extract local visual representations to build similarity maps between the registered image pairs at multiple resolution levels.
We demonstrate that our model derives reliable and consistent motion fields across different sampling trajectories.
arXiv Detail & Related papers (2024-04-26T14:25:07Z) - Volumetric Reconstruction Resolves Off-Resonance Artifacts in Static and
Dynamic PROPELLER MRI [76.60362295758596]
Off-resonance artifacts in magnetic resonance imaging (MRI) are visual distortions that occur when the actual resonant frequencies of spins within the imaging volume differ from the expected frequencies used to encode spatial information.
We propose to resolve these artifacts by lifting the 2D MRI reconstruction problem to 3D, introducing an additional "spectral" dimension to model this off-resonance.
arXiv Detail & Related papers (2023-11-22T05:44:51Z) - K-Space-Aware Cross-Modality Score for Synthesized Neuroimage Quality
Assessment [71.27193056354741]
The problem of how to assess cross-modality medical image synthesis has been largely unexplored.
We propose a new metric K-CROSS to spur progress on this challenging problem.
K-CROSS uses a pre-trained multi-modality segmentation network to predict the lesion location.
arXiv Detail & Related papers (2023-07-10T01:26:48Z) - On Sensitivity and Robustness of Normalization Schemes to Input
Distribution Shifts in Automatic MR Image Diagnosis [58.634791552376235]
Deep Learning (DL) models have achieved state-of-the-art performance in diagnosing multiple diseases using reconstructed images as input.
DL models are sensitive to varying artifacts as it leads to changes in the input data distribution between the training and testing phases.
We propose to use other normalization techniques, such as Group Normalization and Layer Normalization, to inject robustness into model performance against varying image artifacts.
arXiv Detail & Related papers (2023-06-23T03:09:03Z) - Retrospective Motion Correction in Gradient Echo MRI by Explicit Motion
Estimation Using Deep CNNs [0.0]
We propose a strategy to correct for motion artifacts using Deep Convolutional Neuronal Networks (Deep CNNs)
We show that using Deep CNNs the concepts of rigid motion compensation can be generalized to more complex motion fields.
arXiv Detail & Related papers (2023-03-30T09:16:13Z) - Data Consistent Deep Rigid MRI Motion Correction [9.551748050454378]
Motion artifacts are a pervasive problem in MRI, leading to misdiagnosis or mischaracterization in population-level imaging studies.
Current retrospective rigid intra-slice motion correction techniques jointly optimize estimates of the image and the motion parameters.
In this paper, we use a deep network to reduce the joint image-motion parameter search to a search over rigid motion parameters alone.
arXiv Detail & Related papers (2023-01-25T00:21:31Z) - CoRRECT: A Deep Unfolding Framework for Motion-Corrected Quantitative
R2* Mapping [12.414040285543273]
CoRRECT is a unified deep unfolding (DU) framework for Quantitative MRI (qMRI)
It consists of a model-based end-to-end neural network, a method for motion-artifact reduction, and a self-supervised learning scheme.
Our results on experimentally collected multi-Gradient-Recalled Echo (mGRE) MRI data show that CoRRECT recovers motion and inhomogeneity artifact-free R2* maps in highly accelerated acquisition settings.
arXiv Detail & Related papers (2022-10-12T15:49:51Z) - Data and Physics Driven Learning Models for Fast MRI -- Fundamentals and
Methodologies from CNN, GAN to Attention and Transformers [72.047680167969]
This article aims to introduce the deep learning based data driven techniques for fast MRI including convolutional neural network and generative adversarial network based methods.
We will detail the research in coupling physics and data driven models for MRI acceleration.
Finally, we will demonstrate through a few clinical applications, explain the importance of data harmonisation and explainable models for such fast MRI techniques in multicentre and multi-scanner studies.
arXiv Detail & Related papers (2022-04-01T22:48:08Z) - Multifold Acceleration of Diffusion MRI via Slice-Interleaved Diffusion
Encoding (SIDE) [50.65891535040752]
We propose a diffusion encoding scheme, called Slice-Interleaved Diffusion.
SIDE, that interleaves each diffusion-weighted (DW) image volume with slices encoded with different diffusion gradients.
We also present a method based on deep learning for effective reconstruction of DW images from the highly slice-undersampled data.
arXiv Detail & Related papers (2020-02-25T14:48:17Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.