Dimensional Neuroimaging Endophenotypes: Neurobiological Representations
of Disease Heterogeneity Through Machine Learning
- URL: http://arxiv.org/abs/2401.09517v1
- Date: Wed, 17 Jan 2024 16:31:48 GMT
- Title: Dimensional Neuroimaging Endophenotypes: Neurobiological Representations
of Disease Heterogeneity Through Machine Learning
- Authors: Junhao Wen, Mathilde Antoniades, Zhijian Yang, Gyujoon Hwang, Ioanna
Skampardoni, Rongguang Wang, Christos Davatzikos
- Abstract summary: We first present a systematic literature overview of studies using machine learning and multimodal MRI to unravel disease heterogeneity in various neuropsychiatric and neurodegenerative disorders.
We then summarize relevant machine learning methodologies and discuss an emerging paradigm which we call dimensional neuroimaging endophenotype (DNE)
DNE dissects the neurobiological heterogeneity of neuropsychiatric and neurodegenerative disorders into a low dimensional yet informative, quantitative brain phenotypic representation.
- Score: 11.653182438505558
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Machine learning has been increasingly used to obtain individualized
neuroimaging signatures for disease diagnosis, prognosis, and response to
treatment in neuropsychiatric and neurodegenerative disorders. Therefore, it
has contributed to a better understanding of disease heterogeneity by
identifying disease subtypes that present significant differences in various
brain phenotypic measures. In this review, we first present a systematic
literature overview of studies using machine learning and multimodal MRI to
unravel disease heterogeneity in various neuropsychiatric and neurodegenerative
disorders, including Alzheimer disease, schizophrenia, major depressive
disorder, autism spectrum disorder, multiple sclerosis, as well as their
potential in transdiagnostic settings. Subsequently, we summarize relevant
machine learning methodologies and discuss an emerging paradigm which we call
dimensional neuroimaging endophenotype (DNE). DNE dissects the neurobiological
heterogeneity of neuropsychiatric and neurodegenerative disorders into a low
dimensional yet informative, quantitative brain phenotypic representation,
serving as a robust intermediate phenotype (i.e., endophenotype) largely
reflecting underlying genetics and etiology. Finally, we discuss the potential
clinical implications of the current findings and envision future research
avenues.
Related papers
- Parsing altered brain connectivity in neurodevelopmental disorders by integrating graph-based normative modeling and deep generative networks [1.2115617129203957]
We present a framework that integrates deep generative models with graph-based normative modeling to characterize brain network development in the neurotypical population.
Our deep generative model incorporates bio-inspired wiring constraints to effectively capture the developmental trajectories of neurotypical brain networks.
We demonstrate the clinical utility of this framework by applying it to a large sample of children with autism spectrum disorders.
arXiv Detail & Related papers (2024-10-14T20:21:11Z) - UniBrain: Universal Brain MRI Diagnosis with Hierarchical
Knowledge-enhanced Pre-training [66.16134293168535]
We propose a hierarchical knowledge-enhanced pre-training framework for the universal brain MRI diagnosis, termed as UniBrain.
Specifically, UniBrain leverages a large-scale dataset of 24,770 imaging-report pairs from routine diagnostics.
arXiv Detail & Related papers (2023-09-13T09:22:49Z) - Incomplete Multimodal Learning for Complex Brain Disorders Prediction [65.95783479249745]
We propose a new incomplete multimodal data integration approach that employs transformers and generative adversarial networks.
We apply our new method to predict cognitive degeneration and disease outcomes using the multimodal imaging genetic data from Alzheimer's Disease Neuroimaging Initiative cohort.
arXiv Detail & Related papers (2023-05-25T16:29:16Z) - Deep learning reveals the common spectrum underlying multiple brain
disorders in youth and elders from brain functional networks [53.257804915263165]
Brain disorders in the early and late life of humans potentially share pathological alterations in brain functions.
Key evidence from neuroimaging data for pathological commonness remains unrevealed.
We build a deep learning model, using multi-site functional magnetic resonance imaging data, for classifying 5 different brain disorders from healthy controls.
arXiv Detail & Related papers (2023-02-23T09:22:05Z) - Gene-SGAN: a method for discovering disease subtypes with imaging and
genetic signatures via multi-view weakly-supervised deep clustering [6.79528256151419]
Gene-SGAN is a multi-view, weakly-supervised deep clustering method.
It dissects disease heterogeneity by jointly considering phenotypic and genetic data.
Gene-SGAN is broadly applicable to disease subtyping and endophenotype discovery.
arXiv Detail & Related papers (2023-01-25T10:08:30Z) - Promises and pitfalls of deep neural networks in neuroimaging-based
psychiatric research [0.9449650062296824]
Deep neural networks and in particular convolutional neural networks have advanced to a powerful tool in medical imaging.
Here, we first give an introduction into methodological key concepts and resulting methodological promises.
After reviewing recent applications within neuroimaging-based psychiatric research, we discuss current challenges.
arXiv Detail & Related papers (2023-01-20T12:05:59Z) - Constraints on the design of neuromorphic circuits set by the properties
of neural population codes [61.15277741147157]
In the brain, information is encoded, transmitted and used to inform behaviour.
Neuromorphic circuits need to encode information in a way compatible to that used by populations of neuron in the brain.
arXiv Detail & Related papers (2022-12-08T15:16:04Z) - Pathology Steered Stratification Network for Subtype Identification in
Alzheimer's Disease [7.594681424335177]
Alzheimers disease (AD) is a heterogeneous, multitemporal neurodegenerative disorder characterized by beta-amyloid, pathologic tau, and neurodegeneration.
We propose a novel pathology steered stratification network (PSSN) that incorporates established domain knowledge in AD pathology through a reaction-diffusion model.
arXiv Detail & Related papers (2022-10-12T02:52:00Z) - Neuro-symbolic Neurodegenerative Disease Modeling as Probabilistic
Programmed Deep Kernels [93.58854458951431]
We present a probabilistic programmed deep kernel learning approach to personalized, predictive modeling of neurodegenerative diseases.
Our analysis considers a spectrum of neural and symbolic machine learning approaches.
We run evaluations on the problem of Alzheimer's disease prediction, yielding results that surpass deep learning.
arXiv Detail & Related papers (2020-09-16T15:16:03Z) - A Survey on Deep Learning for Neuroimaging-based Brain Disorder Analysis [38.213459556446765]
Deep learning has been recently used for the analysis of neuroimages, such as structural magnetic resonance imaging (MRI), functional MRI, and positron emission tomography (PET)
This paper reviews the applications of deep learning methods for neuroimaging-based brain disorder analysis.
arXiv Detail & Related papers (2020-05-10T04:20:50Z) - A Graph Gaussian Embedding Method for Predicting Alzheimer's Disease
Progression with MEG Brain Networks [59.15734147867412]
Characterizing the subtle changes of functional brain networks associated with Alzheimer's disease (AD) is important for early diagnosis and prediction of disease progression.
We developed a new deep learning method, termed multiple graph Gaussian embedding model (MG2G)
We used MG2G to detect the intrinsic latent dimensionality of MEG brain networks, predict the progression of patients with mild cognitive impairment (MCI) to AD, and identify brain regions with network alterations related to MCI.
arXiv Detail & Related papers (2020-05-08T02:29:24Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.