FairEHR-CLP: Towards Fairness-Aware Clinical Predictions with Contrastive Learning in Multimodal Electronic Health Records
- URL: http://arxiv.org/abs/2402.00955v2
- Date: Sun, 4 Aug 2024 00:12:57 GMT
- Title: FairEHR-CLP: Towards Fairness-Aware Clinical Predictions with Contrastive Learning in Multimodal Electronic Health Records
- Authors: Yuqing Wang, Malvika Pillai, Yun Zhao, Catherine Curtin, Tina Hernandez-Boussard,
- Abstract summary: We present FairEHR-CLP: a framework for fairness-aware Clinical Predictions with Contrastive Learning in EHRs.
FairEHR-CLP operates through a two-stage process, utilizing patient demographics, longitudinal data, and clinical notes.
We introduce a novel fairness metric to effectively measure error rate disparities across subgroups.
- Score: 15.407593899656762
- License: http://creativecommons.org/licenses/by-nc-sa/4.0/
- Abstract: In the high-stakes realm of healthcare, ensuring fairness in predictive models is crucial. Electronic Health Records (EHRs) have become integral to medical decision-making, yet existing methods for enhancing model fairness restrict themselves to unimodal data and fail to address the multifaceted social biases intertwined with demographic factors in EHRs. To mitigate these biases, we present FairEHR-CLP: a general framework for Fairness-aware Clinical Predictions with Contrastive Learning in EHRs. FairEHR-CLP operates through a two-stage process, utilizing patient demographics, longitudinal data, and clinical notes. First, synthetic counterparts are generated for each patient, allowing for diverse demographic identities while preserving essential health information. Second, fairness-aware predictions employ contrastive learning to align patient representations across sensitive attributes, jointly optimized with an MLP classifier with a softmax layer for clinical classification tasks. Acknowledging the unique challenges in EHRs, such as varying group sizes and class imbalance, we introduce a novel fairness metric to effectively measure error rate disparities across subgroups. Extensive experiments on three diverse EHR datasets on three tasks demonstrate the effectiveness of FairEHR-CLP in terms of fairness and utility compared with competitive baselines. FairEHR-CLP represents an advancement towards ensuring both accuracy and equity in predictive healthcare models.
Related papers
- Debias-CLR: A Contrastive Learning Based Debiasing Method for Algorithmic Fairness in Healthcare Applications [0.17624347338410748]
We proposed an implicit in-processing debiasing method to combat disparate treatment.
We used clinical notes of heart failure patients and used diagnostic codes, procedure reports and physiological vitals of the patients.
We found that Debias-CLR was able to reduce the Single-Category Word Embedding Association Test (SC-WEAT) effect size score when debiasing for gender and ethnicity.
arXiv Detail & Related papers (2024-11-15T19:32:01Z) - MedDiffusion: Boosting Health Risk Prediction via Diffusion-based Data
Augmentation [58.93221876843639]
This paper introduces a novel, end-to-end diffusion-based risk prediction model, named MedDiffusion.
It enhances risk prediction performance by creating synthetic patient data during training to enlarge sample space.
It discerns hidden relationships between patient visits using a step-wise attention mechanism, enabling the model to automatically retain the most vital information for generating high-quality data.
arXiv Detail & Related papers (2023-10-04T01:36:30Z) - A Counterfactual Fair Model for Longitudinal Electronic Health Records
via Deconfounder [5.198621505969445]
We propose a novel model called Fair Longitudinal Medical Deconfounder (FLMD)
FLMD aims to achieve both fairness and accuracy in longitudinal Electronic Health Records (EHR) modeling.
We conducted comprehensive experiments on two real-world EHR datasets to demonstrate the effectiveness of FLMD.
arXiv Detail & Related papers (2023-08-22T22:43:20Z) - TREEMENT: Interpretable Patient-Trial Matching via Personalized Dynamic
Tree-Based Memory Network [54.332862955411656]
Clinical trials are critical for drug development but often suffer from expensive and inefficient patient recruitment.
In recent years, machine learning models have been proposed for speeding up patient recruitment via automatically matching patients with clinical trials.
We introduce a dynamic tree-based memory network model named TREEMENT to provide accurate and interpretable patient trial matching.
arXiv Detail & Related papers (2023-07-19T12:35:09Z) - FineEHR: Refine Clinical Note Representations to Improve Mortality
Prediction [3.9026461169566673]
Large-scale electronic health records provide machine learning models with an abundance of clinical text and vital sign data.
Despite the emergence of advanced Natural Language Processing (NLP) algorithms for clinical note analysis, the complex textual structure and noise present in raw clinical data have posed significant challenges.
We propose FINEEHR, a system that utilizes two representation learning techniques, namely metric learning and fine-tuning, to refine clinical note embeddings.
arXiv Detail & Related papers (2023-04-24T02:42:52Z) - Toward Cohort Intelligence: A Universal Cohort Representation Learning
Framework for Electronic Health Record Analysis [15.137213823470544]
We propose a universal COhort Representation lEarning (CORE) framework to augment EHR utilization by leveraging the fine-grained cohort information among patients.
CORE is readily applicable to diverse backbone models, serving as a universal plug-in framework to infuse cohort information into healthcare methods for boosted performance.
arXiv Detail & Related papers (2023-04-10T09:12:37Z) - Large Language Models for Healthcare Data Augmentation: An Example on
Patient-Trial Matching [49.78442796596806]
We propose an innovative privacy-aware data augmentation approach for patient-trial matching (LLM-PTM)
Our experiments demonstrate a 7.32% average improvement in performance using the proposed LLM-PTM method, and the generalizability to new data is improved by 12.12%.
arXiv Detail & Related papers (2023-03-24T03:14:00Z) - SANSformers: Self-Supervised Forecasting in Electronic Health Records
with Attention-Free Models [48.07469930813923]
This work aims to forecast the demand for healthcare services, by predicting the number of patient visits to healthcare facilities.
We introduce SANSformer, an attention-free sequential model designed with specific inductive biases to cater for the unique characteristics of EHR data.
Our results illuminate the promising potential of tailored attention-free models and self-supervised pretraining in refining healthcare utilization predictions across various patient demographics.
arXiv Detail & Related papers (2021-08-31T08:23:56Z) - Bootstrapping Your Own Positive Sample: Contrastive Learning With
Electronic Health Record Data [62.29031007761901]
This paper proposes a novel contrastive regularized clinical classification model.
We introduce two unique positive sampling strategies specifically tailored for EHR data.
Our framework yields highly competitive experimental results in predicting the mortality risk on real-world COVID-19 EHR data.
arXiv Detail & Related papers (2021-04-07T06:02:04Z) - UNITE: Uncertainty-based Health Risk Prediction Leveraging Multi-sourced
Data [81.00385374948125]
We present UNcertaInTy-based hEalth risk prediction (UNITE) model.
UNITE provides accurate disease risk prediction and uncertainty estimation leveraging multi-sourced health data.
We evaluate UNITE on real-world disease risk prediction tasks: nonalcoholic fatty liver disease (NASH) and Alzheimer's disease (AD)
UNITE achieves up to 0.841 in F1 score for AD detection, up to 0.609 in PR-AUC for NASH detection, and outperforms various state-of-the-art baselines by up to $19%$ over the best baseline.
arXiv Detail & Related papers (2020-10-22T02:28:11Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.