A flexible Bayesian g-formula for causal survival analyses with time-dependent confounding
- URL: http://arxiv.org/abs/2402.02306v3
- Date: Sun, 08 Dec 2024 01:20:24 GMT
- Title: A flexible Bayesian g-formula for causal survival analyses with time-dependent confounding
- Abstract summary: We develop an alternative g-formula estimator to enhance the traditional parametric g-formula.<n>We focus on binary time-varying treatments and introduce a general class of g-formulas for discrete survival data.<n>For each type of treatment strategy, we provide posterior sampling algorithms.
- Score: 11.481436666029644
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: In longitudinal observational studies with time-to-event outcomes, a common objective in causal analysis is to estimate the causal survival curve under hypothetical intervention scenarios. The g-formula is a useful tool for this analysis. To enhance the traditional parametric g-formula, we developed an alternative g-formula estimator, which incorporates the Bayesian Additive Regression Trees (BART) into the modeling of the time-evolving generative components, aiming to mitigate the bias due to model misspecification. We focus on binary time-varying treatments and introduce a general class of g-formulas for discrete survival data that can incorporate the longitudinal balancing scores. The minimum sufficient formulation of these longitudinal balancing scores is linked to the nature of treatment strategies, i.e., static or dynamic. For each type of treatment strategy, we provide posterior sampling algorithms. We conducted simulations to illustrate the empirical performance of the proposed method and demonstrate its practical utility using data from the Yale New Haven Health System's electronic health records.
Related papers
- Scalable Counterfactual Risk Estimation for Rare Events in Longitudinal Data [20.985792090921755]
We propose a principled subsampling and reweighting strategy for longitudinal survival data that can be applied to a range of existing causal effect estimators.<n>The proposed method substantially reduces computational burden while preserving consistency and improving estimation stability in rare-outcome settings.
arXiv Detail & Related papers (2026-06-01T01:41:16Z) - Joint Model and Data Sparsification via the Marginal Likelihood [53.29070892356214]
We propose jointly learning individual feature and sample relevancies, enabling simultaneous model and data sparsification.<n>This symmetric pruning of model and data offers a natural extension that preserves conjugacy.<n> Empirical results across diverse regression tasks affirm that a joint ARD approach consistently yields both sparse and robust prediction models.
arXiv Detail & Related papers (2026-05-28T13:26:53Z) - Forecasting Oncology Demand Trends with Boosting-Based Bayesian Conjugate Models [0.0]
This paper proposes a Bayesian framework for predicting oncology demand trends, modeling weekly appointments as a Poisson process with a Gamma prior to the demand rate.<n>To enhance adaptability and capture persistent directional patterns, we incorporate a residual-based boosting mechanism grounded in a Gamma-Log-Normal conjugate structure.<n>Results showed that the proposed model outperforms competing methods in trend detection accuracy, with gains in terms of percentage of correct direction of 38.25% in relation to the second best approach in some cases.
arXiv Detail & Related papers (2026-05-06T12:55:29Z) - A novel hybrid approach for positive-valued DAG learning [60.917028769172795]
We propose the Hybrid Moment-Ratio Scoring (H-MRS) algorithm for learning directed acyclic graphs (DAGs) from positive-valued data.<n>H-MRS integrates log-scale Ridge regression for moment-ratio estimation with a greedy ordering procedure based on raw-scale moment ratios.<n>Experiments on synthetic log-linear data demonstrate competitive precision and recall.
arXiv Detail & Related papers (2026-04-10T04:04:26Z) - Investigating the Impact of Histopathological Foundation Models on Regressive Prediction of Homologous Recombination Deficiency [52.50039435394964]
We systematically evaluate foundation models for regression-based tasks.<n>We extract patch-level features from whole slide images (WSI) using five state-of-the-art foundation models.<n>Models are trained to predict continuous HRD scores based on these extracted features across breast, endometrial, and lung cancer cohorts.
arXiv Detail & Related papers (2026-01-29T14:06:50Z) - Model-free Methods for Event History Analysis and Efficient Adjustment (PhD Thesis) [55.2480439325792]
This thesis is a series of independent contributions to statistics unified by a model-free perspective.
The first chapter elaborates on how a model-free perspective can be used to formulate flexible methods that leverage prediction techniques from machine learning.
The second chapter studies the concept of local independence, which describes whether the evolution of one process is directly influenced by another.
arXiv Detail & Related papers (2025-02-11T19:24:09Z) - Gradient-based Explanations for Deep Learning Survival Models [0.716879432974126]
We propose a framework for gradient-based explanation methods tailored to survival neural networks.
We analyze the implications of their theoretical assumptions for time-dependent explanations in the survival setting.
We propose effective visualizations incorporating the temporal dimension.
arXiv Detail & Related papers (2025-02-07T14:36:55Z) - Memorization and Regularization in Generative Diffusion Models [5.128303432235475]
Diffusion models have emerged as a powerful framework for generative modeling.
The analysis highlights the need for regularization to avoid reproducing the analytically tractable minimizer.
Experiments are evaluated in the context of memorization, and directions for future development of regularization are highlighted.
arXiv Detail & Related papers (2025-01-27T05:17:06Z) - Deep Learning Methods for the Noniterative Conditional Expectation G-Formula for Causal Inference from Complex Observational Data [3.0958655016140892]
The g-formula can be used to estimate causal effects of sustained treatment strategies using observational data.
Parametric models are subject to model misspecification, which may result in biased causal estimates.
We propose a unified deep learning framework for the NICE g-formula estimator.
arXiv Detail & Related papers (2024-10-28T21:00:46Z) - Ensemble Prediction via Covariate-dependent Stacking [0.0]
This study proposes a novel approach to ensemble prediction, called "covariate-dependent stacking" (CDST)<n>Unlike traditional stacking and model averaging methods, CDST allows model weights to vary flexibly as a function of covariates.<n>Our findings suggest that the CDST is especially valuable for but not limited to, complexity-temporal prediction problems.
arXiv Detail & Related papers (2024-08-19T07:31:31Z) - GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models [56.63218531256961]
We introduce GenBench, a benchmarking suite specifically tailored for evaluating the efficacy of Genomic Foundation Models.
GenBench offers a modular and expandable framework that encapsulates a variety of state-of-the-art methodologies.
We provide a nuanced analysis of the interplay between model architecture and dataset characteristics on task-specific performance.
arXiv Detail & Related papers (2024-06-01T08:01:05Z) - Modal Analysis of Spatiotemporal Data via Multivariate Gaussian Process Regression [0.0]
Modal analysis has become an essential tool to understand the coherent structure of complex flows.
To overcome the limitations of data scarcity and irregular sampling, we propose a novel modal analysis technique.
arXiv Detail & Related papers (2024-03-19T19:47:02Z) - Inference of Dependency Knowledge Graph for Electronic Health Records [13.35941801610195]
We propose a framework for deriving a sparse knowledge graph based on the dynamic log-linear topic model.
Within this model, the KG embeddings are estimated by performing singular value decomposition on the empirical pointwise mutual information matrix.
We then establish entrywise normality for the KG low-rank estimator, enabling the recovery of sparse graph edges with controlled type I error.
arXiv Detail & Related papers (2023-12-25T04:45:36Z) - Simulation-based Inference for Cardiovascular Models [57.92535897767929]
We use simulation-based inference to solve the inverse problem of mapping waveforms back to plausible physiological parameters.
We perform an in-silico uncertainty analysis of five biomarkers of clinical interest.
We study the gap between in-vivo and in-silico with the MIMIC-III waveform database.
arXiv Detail & Related papers (2023-07-26T02:34:57Z) - Spatiotemporal Cardiac Statistical Shape Modeling: A Data-Driven
Approach [0.0]
Particle-based shape modeling (PSM) is a data-driven approach that captures population-level shape variations.
This paper proposes a data-driven approach inspired by the PSM method to learn population-level temporal shape changes directly from shape data.
arXiv Detail & Related papers (2022-09-06T18:00:45Z) - Continuous-Time Modeling of Counterfactual Outcomes Using Neural
Controlled Differential Equations [84.42837346400151]
Estimating counterfactual outcomes over time has the potential to unlock personalized healthcare.
Existing causal inference approaches consider regular, discrete-time intervals between observations and treatment decisions.
We propose a controllable simulation environment based on a model of tumor growth for a range of scenarios.
arXiv Detail & Related papers (2022-06-16T17:15:15Z) - Mixed Effects Neural ODE: A Variational Approximation for Analyzing the
Dynamics of Panel Data [50.23363975709122]
We propose a probabilistic model called ME-NODE to incorporate (fixed + random) mixed effects for analyzing panel data.
We show that our model can be derived using smooth approximations of SDEs provided by the Wong-Zakai theorem.
We then derive Evidence Based Lower Bounds for ME-NODE, and develop (efficient) training algorithms.
arXiv Detail & Related papers (2022-02-18T22:41:51Z) - Time varying regression with hidden linear dynamics [74.9914602730208]
We revisit a model for time-varying linear regression that assumes the unknown parameters evolve according to a linear dynamical system.
Counterintuitively, we show that when the underlying dynamics are stable the parameters of this model can be estimated from data by combining just two ordinary least squares estimates.
arXiv Detail & Related papers (2021-12-29T23:37:06Z) - Deep Bayesian Estimation for Dynamic Treatment Regimes with a Long
Follow-up Time [28.11470886127216]
Causal effect estimation for dynamic treatment regimes (DTRs) contributes to sequential decision making.
We combine outcome regression models with treatment models for high dimensional features using uncensored subjects that are small in sample size.
Also, the developed deep Bayesian models can model uncertainty and output the prediction variance which is essential for the safety-aware applications, such as self-driving cars and medical treatment design.
arXiv Detail & Related papers (2021-09-20T13:21:39Z) - Leveraging Global Parameters for Flow-based Neural Posterior Estimation [90.21090932619695]
Inferring the parameters of a model based on experimental observations is central to the scientific method.
A particularly challenging setting is when the model is strongly indeterminate, i.e., when distinct sets of parameters yield identical observations.
We present a method for cracking such indeterminacy by exploiting additional information conveyed by an auxiliary set of observations sharing global parameters.
arXiv Detail & Related papers (2021-02-12T12:23:13Z) - Stochastically forced ensemble dynamic mode decomposition for
forecasting and analysis of near-periodic systems [65.44033635330604]
We introduce a novel load forecasting method in which observed dynamics are modeled as a forced linear system.
We show that its use of intrinsic linear dynamics offers a number of desirable properties in terms of interpretability and parsimony.
Results are presented for a test case using load data from an electrical grid.
arXiv Detail & Related papers (2020-10-08T20:25:52Z) - G-Net: A Deep Learning Approach to G-computation for Counterfactual
Outcome Prediction Under Dynamic Treatment Regimes [11.361895456942374]
G-computation is a method for estimating expected counterfactual outcomes under dynamic time-varying treatment strategies.
This paper introduces G-Net, a novel sequential deep learning framework for G-computation.
We evaluate alternative G-Net implementations using realistically complex temporal simulated data obtained from CVSim.
arXiv Detail & Related papers (2020-03-23T21:08:51Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.