Integrative Variational Autoencoders for Generative Modeling of an Image Outcome with Multiple Input Images
- URL: http://arxiv.org/abs/2402.02734v2
- Date: Fri, 12 Sep 2025 05:11:48 GMT
- Title: Integrative Variational Autoencoders for Generative Modeling of an Image Outcome with Multiple Input Images
- Authors: Bowen Lei, Yeseul Jeon, Rajarshi Guhaniyogi, Aaron Scheffler, Bani Mallick, Alzheimer's Disease Neuroimaging Initiatives,
- Abstract summary: We introduce the Integrative Variational Autoencoder (InVA), the first hierarchical VAE framework for image-on-image regression in neuroimaging.<n>InVA accurately predicts costly PET scans from structural MRI, offering an efficient and powerful tool for multimodal neuroimaging.
- Score: 3.344876046963058
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Understanding relationships across multiple imaging modalities is central to neuroimaging research. We introduce the Integrative Variational Autoencoder (InVA), the first hierarchical VAE framework for image-on-image regression in multimodal neuroimaging. Unlike standard VAEs, which are not designed for predictive integration across modalities, InVA models outcome images as functions of both shared and modality-specific features. This flexible, data-driven approach avoids rigid assumptions of classical tensor regression and outperforms conventional VAEs and nonlinear models such as BART. As a key application, InVA accurately predicts costly PET scans from structural MRI, offering an efficient and powerful tool for multimodal neuroimaging.
Related papers
- impuTMAE: Multi-modal Transformer with Masked Pre-training for Missing Modalities Imputation in Cancer Survival Prediction [75.43342771863837]
We introduce impuTMAE, a novel transformer-based end-to-end approach with an efficient multimodal pre-training strategy.<n>It learns inter- and intra-modal interactions while simultaneously imputing missing modalities by reconstructing masked patches.<n>Our model is pre-trained on heterogeneous, incomplete data and fine-tuned for glioma survival prediction using TCGA-GBM/LGG and BraTS datasets.
arXiv Detail & Related papers (2025-08-08T10:01:16Z) - A Unified Model for Compressed Sensing MRI Across Undersampling Patterns [69.19631302047569]
We propose a unified MRI reconstruction model robust to various measurement undersampling patterns and image resolutions.<n>Our model improves SSIM by 11% and PSNR by 4 dB over a state-of-the-art CNN (End-to-End VarNet) with 600$times$ faster inference than diffusion methods.
arXiv Detail & Related papers (2024-10-05T20:03:57Z) - Transformer-Based Classification Outcome Prediction for Multimodal Stroke Treatment [8.686077984641356]
This study proposes a multi-modal fusion framework Multitrans based on the Transformer architecture and self-attention mechanism.
This architecture combines the study of non-contrast computed tomography (NCCT) images and discharge diagnosis reports of patients undergoing stroke treatment.
arXiv Detail & Related papers (2024-04-19T05:31:37Z) - NeuroPictor: Refining fMRI-to-Image Reconstruction via Multi-individual Pretraining and Multi-level Modulation [55.51412454263856]
This paper proposes to directly modulate the generation process of diffusion models using fMRI signals.
By training with about 67,000 fMRI-image pairs from various individuals, our model enjoys superior fMRI-to-image decoding capacity.
arXiv Detail & Related papers (2024-03-27T02:42:52Z) - Adapting Visual-Language Models for Generalizable Anomaly Detection in Medical Images [68.42215385041114]
This paper introduces a novel lightweight multi-level adaptation and comparison framework to repurpose the CLIP model for medical anomaly detection.
Our approach integrates multiple residual adapters into the pre-trained visual encoder, enabling a stepwise enhancement of visual features across different levels.
Our experiments on medical anomaly detection benchmarks demonstrate that our method significantly surpasses current state-of-the-art models.
arXiv Detail & Related papers (2024-03-19T09:28:19Z) - Bridging the Gap between Synthetic and Authentic Images for Multimodal
Machine Translation [51.37092275604371]
Multimodal machine translation (MMT) simultaneously takes the source sentence and a relevant image as input for translation.
Recent studies suggest utilizing powerful text-to-image generation models to provide image inputs.
However, synthetic images generated by these models often follow different distributions compared to authentic images.
arXiv Detail & Related papers (2023-10-20T09:06:30Z) - Multi-modal Gaussian Process Variational Autoencoders for Neural and
Behavioral Data [0.9622208190558754]
We propose an unsupervised latent variable model which extracts temporally evolving shared and independent latents for distinct, simultaneously recorded experimental modalities.
We validate our model on simulated multi-modal data consisting of Poisson spike counts and MNIST images that scale and rotate smoothly over time.
We show that the multi-modal GP-VAE is able to not only identify the shared and independent latent structure across modalities accurately, but provides good reconstructions of both images and neural rates on held-out trials.
arXiv Detail & Related papers (2023-10-04T19:04:55Z) - Deep Unfolding Convolutional Dictionary Model for Multi-Contrast MRI
Super-resolution and Reconstruction [23.779641808300596]
We propose a multi-contrast convolutional dictionary (MC-CDic) model under the guidance of the optimization algorithm.
We employ the proximal gradient algorithm to optimize the model and unroll the iterative steps into a deep CDic model.
Experimental results demonstrate the superior performance of the proposed MC-CDic model against existing SOTA methods.
arXiv Detail & Related papers (2023-09-03T13:18:59Z) - On Sensitivity and Robustness of Normalization Schemes to Input
Distribution Shifts in Automatic MR Image Diagnosis [58.634791552376235]
Deep Learning (DL) models have achieved state-of-the-art performance in diagnosing multiple diseases using reconstructed images as input.
DL models are sensitive to varying artifacts as it leads to changes in the input data distribution between the training and testing phases.
We propose to use other normalization techniques, such as Group Normalization and Layer Normalization, to inject robustness into model performance against varying image artifacts.
arXiv Detail & Related papers (2023-06-23T03:09:03Z) - Semantic Image Synthesis via Diffusion Models [159.4285444680301]
Denoising Diffusion Probabilistic Models (DDPMs) have achieved remarkable success in various image generation tasks.
Recent work on semantic image synthesis mainly follows the emphde facto Generative Adversarial Nets (GANs)
arXiv Detail & Related papers (2022-06-30T18:31:51Z) - Paired Image-to-Image Translation Quality Assessment Using Multi-Method
Fusion [0.0]
This paper proposes a novel approach that combines signals of image quality between paired source and transformation to predict the latter's similarity with a hypothetical ground truth.
We trained a Multi-Method Fusion (MMF) model via an ensemble of gradient-boosted regressors to predict Deep Image Structure and Texture Similarity (DISTS)
Analysis revealed the task to be feature-constrained, introducing a trade-off at inference between metric time and prediction accuracy.
arXiv Detail & Related papers (2022-05-09T11:05:15Z) - A Learnable Variational Model for Joint Multimodal MRI Reconstruction
and Synthesis [4.056490719080639]
We propose a novel deep-learning model for joint reconstruction and synthesis of multi-modal MRI.
The output of our model includes reconstructed images of the source modalities and high-quality image synthesized in the target modality.
arXiv Detail & Related papers (2022-04-08T01:35:19Z) - Unsupervised Image Registration Towards Enhancing Performance and
Explainability in Cardiac And Brain Image Analysis [3.5718941645696485]
Inter- and intra-modality affine and non-rigid image registration is an essential medical image analysis process in clinical imaging.
We present an un-supervised deep learning registration methodology which can accurately model affine and non-rigid trans-formations.
Our methodology performs bi-directional cross-modality image synthesis to learn modality-invariant latent rep-resentations.
arXiv Detail & Related papers (2022-03-07T12:54:33Z) - Variational Inference for Quantifying Inter-observer Variability in
Segmentation of Anatomical Structures [12.138198227748353]
Most segmentation methods simply model a mapping from an image to its single segmentation map and do not take the disagreement of annotators into consideration.
We propose a novel variational inference framework to model the distribution of plausible segmentation maps, given a specific MR image.
arXiv Detail & Related papers (2022-01-18T16:33:33Z) - Multi-modal Aggregation Network for Fast MR Imaging [85.25000133194762]
We propose a novel Multi-modal Aggregation Network, named MANet, which is capable of discovering complementary representations from a fully sampled auxiliary modality.
In our MANet, the representations from the fully sampled auxiliary and undersampled target modalities are learned independently through a specific network.
Our MANet follows a hybrid domain learning framework, which allows it to simultaneously recover the frequency signal in the $k$-space domain.
arXiv Detail & Related papers (2021-10-15T13:16:59Z) - Audio-to-Image Cross-Modal Generation [0.0]
Cross-modal representation learning allows to integrate information from different modalities into one representation.
We train variational autoencoders (VAEs) to reconstruct image archetypes from audio data.
Our results suggest that even in the case when the generated images are relatively inconsistent (diverse), features that are critical for proper image classification are preserved.
arXiv Detail & Related papers (2021-09-27T21:25:31Z) - Modality Completion via Gaussian Process Prior Variational Autoencoders
for Multi-Modal Glioma Segmentation [75.58395328700821]
We propose a novel model, Multi-modal Gaussian Process Prior Variational Autoencoder (MGP-VAE), to impute one or more missing sub-modalities for a patient scan.
MGP-VAE can leverage the Gaussian Process (GP) prior on the Variational Autoencoder (VAE) to utilize the subjects/patients and sub-modalities correlations.
We show the applicability of MGP-VAE on brain tumor segmentation where either, two, or three of four sub-modalities may be missing.
arXiv Detail & Related papers (2021-07-07T19:06:34Z) - Flow-based Deformation Guidance for Unpaired Multi-Contrast MRI
Image-to-Image Translation [7.8333615755210175]
In this paper, we introduce a novel approach to unpaired image-to-image translation based on the invertible architecture.
We utilize the temporal information between consecutive slices to provide more constraints to the optimization for transforming one domain to another in unpaired medical images.
arXiv Detail & Related papers (2020-12-03T09:10:22Z) - Improved Slice-wise Tumour Detection in Brain MRIs by Computing
Dissimilarities between Latent Representations [68.8204255655161]
Anomaly detection for Magnetic Resonance Images (MRIs) can be solved with unsupervised methods.
We have proposed a slice-wise semi-supervised method for tumour detection based on the computation of a dissimilarity function in the latent space of a Variational AutoEncoder.
We show that by training the models on higher resolution images and by improving the quality of the reconstructions, we obtain results which are comparable with different baselines.
arXiv Detail & Related papers (2020-07-24T14:02:09Z) - CoMIR: Contrastive Multimodal Image Representation for Registration [4.543268895439618]
We propose contrastive coding to learn shared, dense image representations, referred to as CoMIRs (Contrastive Multimodal Image Representations)
CoMIRs enable the registration of multimodal images where existing registration methods often fail due to a lack of sufficiently similar image structures.
arXiv Detail & Related papers (2020-06-11T10:51:33Z) - Learning Deformable Image Registration from Optimization: Perspective,
Modules, Bilevel Training and Beyond [62.730497582218284]
We develop a new deep learning based framework to optimize a diffeomorphic model via multi-scale propagation.
We conduct two groups of image registration experiments on 3D volume datasets including image-to-atlas registration on brain MRI data and image-to-image registration on liver CT data.
arXiv Detail & Related papers (2020-04-30T03:23:45Z) - Pathological Retinal Region Segmentation From OCT Images Using Geometric
Relation Based Augmentation [84.7571086566595]
We propose improvements over previous GAN-based medical image synthesis methods by jointly encoding the intrinsic relationship of geometry and shape.
The proposed method outperforms state-of-the-art segmentation methods on the public RETOUCH dataset having images captured from different acquisition procedures.
arXiv Detail & Related papers (2020-03-31T11:50:43Z) - Learning Enriched Features for Real Image Restoration and Enhancement [166.17296369600774]
convolutional neural networks (CNNs) have achieved dramatic improvements over conventional approaches for image restoration task.
We present a novel architecture with the collective goals of maintaining spatially-precise high-resolution representations through the entire network.
Our approach learns an enriched set of features that combines contextual information from multiple scales, while simultaneously preserving the high-resolution spatial details.
arXiv Detail & Related papers (2020-03-15T11:04:30Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.