Advanced Tumor Segmentation in Medical Imaging: An Ensemble Approach for BraTS 2023 Adult Glioma and Pediatric Tumor Tasks
- URL: http://arxiv.org/abs/2403.09262v1
- Date: Thu, 14 Mar 2024 10:37:41 GMT
- Title: Advanced Tumor Segmentation in Medical Imaging: An Ensemble Approach for BraTS 2023 Adult Glioma and Pediatric Tumor Tasks
- Authors: Fadillah Maani, Anees Ur Rehman Hashmi, Mariam Aljuboory, Numan Saeed, Ikboljon Sobirov, Mohammad Yaqub,
- Abstract summary: This study outlines our methodology for segmenting tumors in the context of two distinct tasks from the BraTS 2023 challenge: Adult Glioma and Pediatric Tumors.
Our approach leverages two encoder-decoder-based CNN models, namely SegResNet and MedNeXt, for segmenting three distinct subregions of tumors.
Our proposed approach achieves third place in the BraTS 2023 Adult Glioma Challenges with an average of 0.8313 and 36.38 Dice and HD95 scores on the test set, respectively.
- Score: 0.8184931154670512
- License: http://creativecommons.org/licenses/by-nc-nd/4.0/
- Abstract: Automated segmentation proves to be a valuable tool in precisely detecting tumors within medical images. The accurate identification and segmentation of tumor types hold paramount importance in diagnosing, monitoring, and treating highly fatal brain tumors. The BraTS challenge serves as a platform for researchers to tackle this issue by participating in open challenges focused on tumor segmentation. This study outlines our methodology for segmenting tumors in the context of two distinct tasks from the BraTS 2023 challenge: Adult Glioma and Pediatric Tumors. Our approach leverages two encoder-decoder-based CNN models, namely SegResNet and MedNeXt, for segmenting three distinct subregions of tumors. We further introduce a set of robust postprocessing to improve the segmentation, especially for the newly introduced BraTS 2023 metrics. The specifics of our approach and comprehensive performance analyses are expounded upon in this work. Our proposed approach achieves third place in the BraTS 2023 Adult Glioma Segmentation Challenges with an average of 0.8313 and 36.38 Dice and HD95 scores on the test set, respectively.
Related papers
- Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge [44.586530244472655]
We describe the design and results from the BraTS 2023 Intracranial Meningioma Challenge.
The BraTS Meningioma Challenge differed from prior BraTS Glioma challenges in that it focused on meningiomas.
The top ranked team had a lesion-wise median dice similarity coefficient (DSC) of 0.976, 0.976, and 0.964 for enhancing tumor, tumor core, and whole tumor.
arXiv Detail & Related papers (2024-05-16T03:23:57Z) - On Enhancing Brain Tumor Segmentation Across Diverse Populations with Convolutional Neural Networks [0.9304666952022026]
This work proposes a brain tumor segmentation method as part of the BraTS-GoAT challenge.
The task is to segment tumors in brain MRI scans automatically from various populations, such as adults, pediatrics, and underserved sub-Saharan Africa.
Our experiments show that our method performs well on the unseen validation set with an average DSC of 85.54% and HD95 of 27.88.
arXiv Detail & Related papers (2024-05-05T08:55:00Z) - Multimodal CNN Networks for Brain Tumor Segmentation in MRI: A BraTS
2022 Challenge Solution [0.0]
This paper describes our contribution to the BraTS 2022 Continuous Evaluation challenge.
We propose a new ensemble of multiple deep learning frameworks namely, DeepSeg, nnU-Net, and DeepSCAN for automatic glioma boundaries detection in pre-operative MRI.
It is worth noting that our ensemble models took first place in the final evaluation on the BraTS testing dataset with Dice scores of 0.9294, 0.8788, and 0.8803, and Hausdorf distance of 5.23, 13.54, and 12.05, for the whole tumor, tumor core, and enhancing tumor, respectively.
arXiv Detail & Related papers (2022-12-19T09:14:23Z) - Ensemble CNN Networks for GBM Tumors Segmentation using Multi-parametric
MRI [0.0]
We propose a new aggregation of two deep learning frameworks namely, DeepSeg and nnU-Net for automatic glioblastoma recognition in pre-operative mpMRI.
Our ensemble method obtains Dice similarity scores of 92.00, 87.33, and 84.10 and Hausdorff Distances of 3.81, 8.91, and 16.02 for the enhancing tumor, tumor core, and whole tumor regions.
arXiv Detail & Related papers (2021-12-13T10:51:20Z) - H2NF-Net for Brain Tumor Segmentation using Multimodal MR Imaging: 2nd
Place Solution to BraTS Challenge 2020 Segmentation Task [96.49879910148854]
Our H2NF-Net uses the single and cascaded HNF-Nets to segment different brain tumor sub-regions.
We trained and evaluated our model on the Multimodal Brain Tumor Challenge (BraTS) 2020 dataset.
Our method won the second place in the BraTS 2020 challenge segmentation task out of nearly 80 participants.
arXiv Detail & Related papers (2020-12-30T20:44:55Z) - Automatic Brain Tumor Segmentation with Scale Attention Network [1.7767466724342065]
Multimodal Brain Tumor Challenge 2020 (BraTS 2020) provides a common platform for comparing different automatic algorithms on multi-parametric Magnetic Resonance Imaging (mpMRI)
We propose a dynamic scale attention mechanism that incorporates low-level details with high-level semantics from feature maps at different scales.
Our framework was trained using the 369 challenge training cases provided by BraTS 2020, and achieved an average Dice Similarity Coefficient (DSC) of 0.8828, 0.8433 and 0.8177, as well as 95% Hausdorff distance (in millimeter) of 5.2176, 17.9697 and 13.4298 on 166 testing cases for whole tumor
arXiv Detail & Related papers (2020-11-06T04:45:49Z) - Segmentation for Classification of Screening Pancreatic Neuroendocrine
Tumors [72.65802386845002]
This work presents comprehensive results to detect in the early stage the pancreatic neuroendocrine tumors (PNETs) in abdominal CT scans.
To the best of our knowledge, this task has not been studied before as a computational task.
Our approach outperforms state-of-the-art segmentation networks and achieves a sensitivity of $89.47%$ at a specificity of $81.08%$.
arXiv Detail & Related papers (2020-04-04T21:21:44Z) - Robust Medical Instrument Segmentation Challenge 2019 [56.148440125599905]
Intraoperative tracking of laparoscopic instruments is often a prerequisite for computer and robotic-assisted interventions.
Our challenge was based on a surgical data set comprising 10,040 annotated images acquired from a total of 30 surgical procedures.
The results confirm the initial hypothesis, namely that algorithm performance degrades with an increasing domain gap.
arXiv Detail & Related papers (2020-03-23T14:35:08Z) - Stan: Small tumor-aware network for breast ultrasound image segmentation [68.8204255655161]
We propose a novel deep learning architecture called Small Tumor-Aware Network (STAN) to improve the performance of segmenting tumors with different size.
The proposed approach outperformed the state-of-the-art approaches in segmenting small breast tumors.
arXiv Detail & Related papers (2020-02-03T22:25:01Z) - VerSe: A Vertebrae Labelling and Segmentation Benchmark for
Multi-detector CT Images [121.31355003451152]
Large Scale Vertebrae Challenge (VerSe) was organised in conjunction with the International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI) in 2019 and 2020.
We present the the results of this evaluation and further investigate the performance-variation at vertebra-level, scan-level, and at different fields-of-view.
arXiv Detail & Related papers (2020-01-24T21:09:18Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.