Latent Relationship Mining of Glaucoma Biomarkers: a TRI-LSTM based Deep Learning
- URL: http://arxiv.org/abs/2408.15555v1
- Date: Wed, 28 Aug 2024 06:08:46 GMT
- Title: Latent Relationship Mining of Glaucoma Biomarkers: a TRI-LSTM based Deep Learning
- Authors: Cheng Huang, Junhao Shen, Qiuyu Luo, Karanjit Kooner, Tsengdar Lee, Yishen Liu, Jia Zhang,
- Abstract summary: We learn from cognitive science concept and study how ophthalmologists judge glaucoma detection.
We propose a hierarchical decision making system, centered around a holistic set of biomarker-oriented machine learning models.
Our model is among the first efforts to explore the intrinsic connections among glaucoma biomarkers.
- Score: 4.35211788867287
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: In recently years, a significant amount of research has been conducted on applying deep learning methods for glaucoma classification and detection. However, the explainability of those established machine learning models remains a big concern. In this research, in contrast, we learn from cognitive science concept and study how ophthalmologists judge glaucoma detection. Simulating experts' efforts, we propose a hierarchical decision making system, centered around a holistic set of carefully designed biomarker-oriented machine learning models. While biomarkers represent the key indicators of how ophthalmologists identify glaucoma, they usually exhibit latent inter-relations. We thus construct a time series model, named TRI-LSTM, capable of calculating and uncovering potential and latent relationships among various biomarkers of glaucoma. Our model is among the first efforts to explore the intrinsic connections among glaucoma biomarkers. We monitor temporal relationships in patients' disease states over time and to capture and retain the progression of disease-relevant clinical information from prior visits, thereby enriching biomarker's potential relationships. Extensive experiments over real-world dataset have demonstrated the effectiveness of the proposed model.
Related papers
- Deep Learning to Predict Glaucoma Progression using Structural Changes in the Eye [0.20718016474717196]
Glaucoma is a chronic eye disease characterized by optic neuropathy, leading to irreversible vision loss.
Early detection is crucial to monitor atrophy and develop treatment strategies to prevent further vision impairment.
In this study, we use deep learning models to identify complex disease traits and progression criteria.
arXiv Detail & Related papers (2024-06-09T01:12:41Z) - Deep-learning-based clustering of OCT images for biomarker discovery in age-related macular degeneration (Pinnacle study report 4) [7.932410831191909]
We introduce a deep-learning-based biomarker proposal system for age-related macular degeneration (AMD)
It works by first training a neural network using self-supervised contrastive learning to discover features relating to both known and unknown AMD biomarkers.
arXiv Detail & Related papers (2024-03-12T13:48:17Z) - ProBio: A Protocol-guided Multimodal Dataset for Molecular Biology Lab [67.24684071577211]
The challenge of replicating research results has posed a significant impediment to the field of molecular biology.
We first curate a comprehensive multimodal dataset, named ProBio, as an initial step towards this objective.
Next, we devise two challenging benchmarks, transparent solution tracking and multimodal action recognition, to emphasize the unique characteristics and difficulties associated with activity understanding in BioLab settings.
arXiv Detail & Related papers (2023-11-01T14:44:01Z) - Clustering disease trajectories in contrastive feature space for
biomarker discovery in age-related macular degeneration [7.2870166968239305]
Age-related macular degeneration is the leading cause of blindness in the elderly.
Current grading systems based on imaging biomarkers only coarsely group disease stages into broad categories.
We present the first method to automatically discover biomarkers that capture temporal dynamics of disease progression.
arXiv Detail & Related papers (2023-01-11T15:44:42Z) - Unsupervised ensemble-based phenotyping helps enhance the
discoverability of genes related to heart morphology [57.25098075813054]
We propose a new framework for gene discovery entitled Un Phenotype Ensembles.
It builds a redundant yet highly expressive representation by pooling a set of phenotypes learned in an unsupervised manner.
These phenotypes are then analyzed via (GWAS), retaining only highly confident and stable associations.
arXiv Detail & Related papers (2023-01-07T18:36:44Z) - Counterfactual Image Synthesis for Discovery of Personalized Predictive
Image Markers [0.293168019422713]
We show how a deep conditional generative model can be used to perturb local imaging features in baseline images that are pertinent to subject-specific future disease evolution.
Our model produces counterfactuals with changes in imaging features that reflect established clinical markers predictive of future MRI lesional activity at the population level.
arXiv Detail & Related papers (2022-08-03T18:58:45Z) - Cross-modal Clinical Graph Transformer for Ophthalmic Report Generation [116.87918100031153]
We propose a Cross-modal clinical Graph Transformer (CGT) for ophthalmic report generation (ORG)
CGT injects clinical relation triples into the visual features as prior knowledge to drive the decoding procedure.
Experiments on the large-scale FFA-IR benchmark demonstrate that the proposed CGT is able to outperform previous benchmark methods.
arXiv Detail & Related papers (2022-06-04T13:16:30Z) - Unsupervised deep learning techniques for powdery mildew recognition
based on multispectral imaging [63.62764375279861]
This paper presents a deep learning approach to automatically recognize powdery mildew on cucumber leaves.
We focus on unsupervised deep learning techniques applied to multispectral imaging data.
We propose the use of autoencoder architectures to investigate two strategies for disease detection.
arXiv Detail & Related papers (2021-12-20T13:29:13Z) - Assessing glaucoma in retinal fundus photographs using Deep Feature
Consistent Variational Autoencoders [63.391402501241195]
glaucoma is challenging to detect since it remains asymptomatic until the symptoms are severe.
Early identification of glaucoma is generally made based on functional, structural, and clinical assessments.
Deep learning methods have partially solved this dilemma by bypassing the marker identification stage and analyzing high-level information directly to classify the data.
arXiv Detail & Related papers (2021-10-04T16:06:49Z) - Alzheimer's Disease Diagnosis via Deep Factorization Machine Models [3.135152720206844]
The current state-of-the-art deep neural networks (DNNs) for Alzheimer's Disease diagnosis use different biomarker combinations to classify patients.
We propose a Deep Factorization Machine model that combines the ability of DNNs to learn complex relationships and the ease of interpretability of a linear model.
arXiv Detail & Related papers (2021-08-12T18:39:04Z) - G-MIND: An End-to-End Multimodal Imaging-Genetics Framework for
Biomarker Identification and Disease Classification [49.53651166356737]
We propose a novel deep neural network architecture to integrate imaging and genetics data, as guided by diagnosis, that provides interpretable biomarkers.
We have evaluated our model on a population study of schizophrenia that includes two functional MRI (fMRI) paradigms and Single Nucleotide Polymorphism (SNP) data.
arXiv Detail & Related papers (2021-01-27T19:28:04Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.