SEW: Self-calibration Enhanced Whole Slide Pathology Image Analysis
- URL: http://arxiv.org/abs/2412.10853v2
- Date: Fri, 14 Feb 2025 13:33:14 GMT
- Title: SEW: Self-calibration Enhanced Whole Slide Pathology Image Analysis
- Authors: Haoming Luo, Xiaotian Yu, Shengxuming Zhang, Jiabin Xia, Yang Jian, Yuning Sun, Liang Xue, Mingli Song, Jing Zhang, Xiuming Zhang, Zunlei Feng,
- Abstract summary: We propose a self-calibration enhanced framework for whole slide pathology image analysis.
The proposed framework can rapidly deliver accurate and explainable results for pathological grading and prognosis tasks.
- Score: 34.97298505596853
- License:
- Abstract: Pathology images are considered the ``gold standard" for cancer diagnosis and treatment, with gigapixel images providing extensive tissue and cellular information. Existing methods fail to simultaneously extract global structural and local detail features for comprehensive pathology image analysis efficiently. To address these limitations, we propose a self-calibration enhanced framework for whole slide pathology image analysis, comprising three components: a global branch, a focus predictor, and a detailed branch. The global branch initially classifies using the pathological thumbnail, while the focus predictor identifies relevant regions for classification based on the last layer features of the global branch. The detailed extraction branch then assesses whether the magnified regions correspond to the lesion area. Finally, a feature consistency constraint between the global and detail branches ensures that the global branch focuses on the appropriate region and extracts sufficient discriminative features for final identification. These focused discriminative features prove invaluable for uncovering novel prognostic tumor markers from the perspective of feature cluster uniqueness and tissue spatial distribution. Extensive experiment results demonstrate that the proposed framework can rapidly deliver accurate and explainable results for pathological grading and prognosis tasks.
Related papers
- HistoGym: A Reinforcement Learning Environment for Histopathological Image Analysis [9.615399811006034]
HistoGym aims to foster whole slide image diagnosis by mimicking the real-life processes of doctors.
We offer various scenarios for different organs and cancers, including both WSI-based and selected region-based scenarios.
arXiv Detail & Related papers (2024-08-16T17:19:07Z) - FMDNN: A Fuzzy-guided Multi-granular Deep Neural Network for Histopathological Image Classification [40.94024666952439]
We propose the Fuzzy-guided Multi-granularity Deep Neural Network (FMDNN)
Inspired by the multi-granular diagnostic approach of pathologists, we perform feature extraction on cell structures at coarse, medium, and fine granularity.
A fuzzy-guided cross-attention module guides universal fuzzy features toward multi-granular features.
arXiv Detail & Related papers (2024-07-22T00:46:15Z) - From Pixel to Slide image: Polarization Modality-based Pathological
Diagnosis Using Representation Learning [9.326969394501958]
Pathologically, thyroid tumors pose diagnostic challenges due to improper specimen sampling.
We have designed a three-stage model using representation learning to integrate pixel-level and slice-level annotations for distinguishing thyroid tumors.
arXiv Detail & Related papers (2024-01-03T02:01:09Z) - Multi-task Explainable Skin Lesion Classification [54.76511683427566]
We propose a few-shot-based approach for skin lesions that generalizes well with few labelled data.
The proposed approach comprises a fusion of a segmentation network that acts as an attention module and classification network.
arXiv Detail & Related papers (2023-10-11T05:49:47Z) - Reliable Joint Segmentation of Retinal Edema Lesions in OCT Images [55.83984261827332]
In this paper, we propose a novel reliable multi-scale wavelet-enhanced transformer network.
We develop a novel segmentation backbone that integrates a wavelet-enhanced feature extractor network and a multi-scale transformer module.
Our proposed method achieves better segmentation accuracy with a high degree of reliability as compared to other state-of-the-art segmentation approaches.
arXiv Detail & Related papers (2022-12-01T07:32:56Z) - Valuing Vicinity: Memory attention framework for context-based semantic
segmentation in histopathology [0.8866112270350612]
The identification of detailed types of tissue is crucial for providing personalized cancer therapies.
We propose a patch neighbour attention mechanism to query the neighbouring tissue context from a patch embedding memory bank.
Our memory attention framework (MAF) mimics a pathologist's annotation procedure -- zooming out and considering surrounding tissue context.
arXiv Detail & Related papers (2022-10-21T08:49:30Z) - ScoreNet: Learning Non-Uniform Attention and Augmentation for
Transformer-Based Histopathological Image Classification [11.680355561258427]
High-resolution images hinder progress in digital pathology.
patch-based processing often incorporates multiple instance learning (MIL) to aggregate local patch-level representations yielding image-level prediction.
This paper proposes a transformer-based architecture specifically tailored for histological image classification.
It combines fine-grained local attention with a coarse global attention mechanism to learn meaningful representations of high-resolution images at an efficient computational cost.
arXiv Detail & Related papers (2022-02-15T16:55:09Z) - Few-shot Medical Image Segmentation using a Global Correlation Network
with Discriminative Embedding [60.89561661441736]
We propose a novel method for few-shot medical image segmentation.
We construct our few-shot image segmentor using a deep convolutional network trained episodically.
We enhance discriminability of deep embedding to encourage clustering of the feature domains of the same class.
arXiv Detail & Related papers (2020-12-10T04:01:07Z) - Gleason Grading of Histology Prostate Images through Semantic
Segmentation via Residual U-Net [60.145440290349796]
The final diagnosis of prostate cancer is based on the visual detection of Gleason patterns in prostate biopsy by pathologists.
Computer-aided-diagnosis systems allow to delineate and classify the cancerous patterns in the tissue.
The methodological core of this work is a U-Net convolutional neural network for image segmentation modified with residual blocks able to segment cancerous tissue.
arXiv Detail & Related papers (2020-05-22T19:49:10Z) - Weakly supervised multiple instance learning histopathological tumor
segmentation [51.085268272912415]
We propose a weakly supervised framework for whole slide imaging segmentation.
We exploit a multiple instance learning scheme for training models.
The proposed framework has been evaluated on multi-locations and multi-centric public data from The Cancer Genome Atlas and the PatchCamelyon dataset.
arXiv Detail & Related papers (2020-04-10T13:12:47Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.