Towards Classifying Histopathological Microscope Images as Time Series Data
- URL: http://arxiv.org/abs/2506.15977v1
- Date: Thu, 19 Jun 2025 02:51:15 GMT
- Title: Towards Classifying Histopathological Microscope Images as Time Series Data
- Authors: Sungrae Hong, Hyeongmin Park, Youngsin Ko, Sol Lee, Bryan Wong, Mun Yong Yi,
- Abstract summary: We propose a novel approach to classifying microscopy images as time series data.<n>The proposed method fits image sequences of varying lengths to a fixed-length target by leveraging Dynamic Time-series Warping (DTW)<n>We demonstrate the effectiveness of our approach by comparing performance with various baselines and showcasing the benefits of using various inference strategies.
- Score: 2.6553713413568913
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: As the frontline data for cancer diagnosis, microscopic pathology images are fundamental for providing patients with rapid and accurate treatment. However, despite their practical value, the deep learning community has largely overlooked their usage. This paper proposes a novel approach to classifying microscopy images as time series data, addressing the unique challenges posed by their manual acquisition and weakly labeled nature. The proposed method fits image sequences of varying lengths to a fixed-length target by leveraging Dynamic Time-series Warping (DTW). Attention-based pooling is employed to predict the class of the case simultaneously. We demonstrate the effectiveness of our approach by comparing performance with various baselines and showcasing the benefits of using various inference strategies in achieving stable and reliable results. Ablation studies further validate the contribution of each component. Our approach contributes to medical image analysis by not only embracing microscopic images but also lifting them to a trustworthy level of performance.
Related papers
- Single Image Test-Time Adaptation via Multi-View Co-Training [1.73329304643509]
We propose a Patch-Based Multi-View Co-Training method for Single Image Test-Time adaptation.<n>Our method enforces feature and prediction consistency through uncertainty-guided self-training.<n>Our method achieves performance close to the upper bound supervised benchmark.
arXiv Detail & Related papers (2025-06-30T10:29:33Z) - Eye-gaze Guided Multi-modal Alignment for Medical Representation Learning [65.54680361074882]
Eye-gaze Guided Multi-modal Alignment (EGMA) framework harnesses eye-gaze data for better alignment of medical visual and textual features.
We conduct downstream tasks of image classification and image-text retrieval on four medical datasets.
arXiv Detail & Related papers (2024-03-19T03:59:14Z) - Realistic Data Enrichment for Robust Image Segmentation in
Histopathology [2.248423960136122]
We propose a new approach, based on diffusion models, which can enrich an imbalanced dataset with plausible examples from underrepresented groups.
Our method can simply expand limited clinical datasets making them suitable to train machine learning pipelines.
arXiv Detail & Related papers (2023-04-19T09:52:50Z) - Rethinking Semi-Supervised Medical Image Segmentation: A
Variance-Reduction Perspective [51.70661197256033]
We propose ARCO, a semi-supervised contrastive learning framework with stratified group theory for medical image segmentation.
We first propose building ARCO through the concept of variance-reduced estimation and show that certain variance-reduction techniques are particularly beneficial in pixel/voxel-level segmentation tasks.
We experimentally validate our approaches on eight benchmarks, i.e., five 2D/3D medical and three semantic segmentation datasets, with different label settings.
arXiv Detail & Related papers (2023-02-03T13:50:25Z) - Learning to Exploit Temporal Structure for Biomedical Vision-Language
Processing [53.89917396428747]
Self-supervised learning in vision-language processing exploits semantic alignment between imaging and text modalities.
We explicitly account for prior images and reports when available during both training and fine-tuning.
Our approach, named BioViL-T, uses a CNN-Transformer hybrid multi-image encoder trained jointly with a text model.
arXiv Detail & Related papers (2023-01-11T16:35:33Z) - GraVIS: Grouping Augmented Views from Independent Sources for
Dermatology Analysis [52.04899592688968]
We propose GraVIS, which is specifically optimized for learning self-supervised features from dermatology images.
GraVIS significantly outperforms its transfer learning and self-supervised learning counterparts in both lesion segmentation and disease classification tasks.
arXiv Detail & Related papers (2023-01-11T11:38:37Z) - Stain-invariant self supervised learning for histopathology image
analysis [74.98663573628743]
We present a self-supervised algorithm for several classification tasks within hematoxylin and eosin stained images of breast cancer.
Our method achieves the state-of-the-art performance on several publicly available breast cancer datasets.
arXiv Detail & Related papers (2022-11-14T18:16:36Z) - Self-Supervised Endoscopic Image Key-Points Matching [1.3764085113103222]
This paper proposes a novel self-supervised approach for endoscopic image matching based on deep learning techniques.
Our method outperformed standard hand-crafted local feature descriptors in terms of precision and recall.
arXiv Detail & Related papers (2022-08-24T10:47:21Z) - Metadata-enhanced contrastive learning from retinal optical coherence tomography images [7.932410831191909]
We extend conventional contrastive frameworks with a novel metadata-enhanced strategy.
Our approach employs widely available patient metadata to approximate the true set of inter-image contrastive relationships.
Our approach outperforms both standard contrastive methods and a retinal image foundation model in five out of six image-level downstream tasks.
arXiv Detail & Related papers (2022-08-04T08:53:15Z) - Temporal Context Matters: Enhancing Single Image Prediction with Disease
Progression Representations [8.396615243014768]
We present a deep learning approach that leverages temporal progression information to improve clinical outcome predictions from single-timepoint images.
In our method, a self-attention based Temporal Convolutional Network (TCN) is used to learn a representation that is most reflective of the disease trajectory.
A Vision Transformer is pretrained in a self-supervised fashion to extract features from single-timepoint images.
arXiv Detail & Related papers (2022-03-02T22:11:07Z) - Evaluation of Complexity Measures for Deep Learning Generalization in
Medical Image Analysis [77.34726150561087]
PAC-Bayes flatness-based and path norm-based measures produce the most consistent explanation for the combination of models and data.
We also investigate the use of multi-task classification and segmentation approach for breast images.
arXiv Detail & Related papers (2021-03-04T20:58:22Z) - Pathological Retinal Region Segmentation From OCT Images Using Geometric
Relation Based Augmentation [84.7571086566595]
We propose improvements over previous GAN-based medical image synthesis methods by jointly encoding the intrinsic relationship of geometry and shape.
The proposed method outperforms state-of-the-art segmentation methods on the public RETOUCH dataset having images captured from different acquisition procedures.
arXiv Detail & Related papers (2020-03-31T11:50:43Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.