Towards a Unified Textual Graph Framework for Spectral Reasoning via Physical and Chemical Information Fusion
- URL: http://arxiv.org/abs/2506.17761v1
- Date: Sat, 21 Jun 2025 16:58:30 GMT
- Title: Towards a Unified Textual Graph Framework for Spectral Reasoning via Physical and Chemical Information Fusion
- Authors: Jiheng Liang, Ziru Yu, Zujie Xie, Yuchen Guo, Yulan Guo, Xiangyang Yu,
- Abstract summary: We propose a novel multi-modal spectral analysis framework that integrates prior knowledge graphs with Large Language Models.<n>Our method bridges physical spectral measurements and chemical structural semantics by representing them in a unified Textual Graph format.<n>Our framework achieves consistently high performance across multiple spectral analysis tasks, including node-level, edge-level, and graph-level classification.
- Score: 33.53441350137292
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Motivated by the limitations of current spectral analysis methods-such as reliance on single-modality data, limited generalizability, and poor interpretability-we propose a novel multi-modal spectral analysis framework that integrates prior knowledge graphs with Large Language Models. Our method explicitly bridges physical spectral measurements and chemical structural semantics by representing them in a unified Textual Graph format, enabling flexible, interpretable, and generalizable spectral understanding. Raw spectra are first transformed into TAGs, where nodes and edges are enriched with textual attributes describing both spectral properties and chemical context. These are then merged with relevant prior knowledge-including functional groups and molecular graphs-to form a Task Graph that incorporates "Prompt Nodes" supporting LLM-based contextual reasoning. A Graph Neural Network further processes this structure to complete downstream tasks. This unified design enables seamless multi-modal integration and automated feature decoding with minimal manual annotation. Our framework achieves consistently high performance across multiple spectral analysis tasks, including node-level, edge-level, and graph-level classification. It demonstrates robust generalization in both zero-shot and few-shot settings, highlighting its effectiveness in learning from limited data and supporting in-context reasoning. This work establishes a scalable and interpretable foundation for LLM-driven spectral analysis, unifying physical and chemical modalities for scientific applications.
Related papers
- DiffSpectra: Molecular Structure Elucidation from Spectra using Diffusion Models [66.41802970528133]
Molecular structure elucidation from spectra is a foundational problem in chemistry.<n>Traditional methods rely heavily on expert interpretation and lack scalability.<n>We present DiffSpectra, a generative framework that directly infers both 2D and 3D molecular structures from multi-modal spectral data.
arXiv Detail & Related papers (2025-07-09T13:57:20Z) - SpecCLIP: Aligning and Translating Spectroscopic Measurements for Stars [1.4217538206528657]
We present SpecCLIP, a foundation model framework that extends LLM-inspired methodologies to stellar spectral analysis.<n>By training foundation models on large-scale spectral datasets, our goal is to learn robust and informative embeddings that support diverse downstream applications.<n>We demonstrate that fine-tuning these models on moderate-sized labeled datasets improves adaptability to tasks such as stellar- parameter estimation and chemical-abundance determination.
arXiv Detail & Related papers (2025-07-02T17:49:52Z) - Spectra-to-Structure and Structure-to-Spectra Inference Across the Periodic Table [60.78615287040791]
XAStruct is a learning framework capable of both predicting XAS spectra from crystal structures and inferring local structural descriptors from XAS input.<n>XAStruct is trained on a large-scale dataset spanning over 70 elements across the periodic table.
arXiv Detail & Related papers (2025-06-13T15:58:05Z) - Integrating Structural and Semantic Signals in Text-Attributed Graphs with BiGTex [0.16385815610837165]
BiGTex is a novel architecture that tightly integrates GNNs and LLMs through stacked Graph-Text Fusion Units.<n>BiGTex achieves state-of-the-art performance in node classification and generalizes effectively to link prediction.
arXiv Detail & Related papers (2025-04-16T20:25:11Z) - GraphMaster: Automated Graph Synthesis via LLM Agents in Data-Limited Environments [32.916371346197835]
GraphMaster is the first multi-agent framework specifically designed for graph data synthesis in data-limited environments.<n>We develop new data-limited "Sub" variants of six standard graph benchmarks, specifically designed to test synthesis capabilities under realistic constraints.<n>We also develop a novel interpretability assessment framework that combines human evaluation with a principled Grassmannian manifold-based analysis.
arXiv Detail & Related papers (2025-04-01T12:21:50Z) - How Do Large Language Models Understand Graph Patterns? A Benchmark for Graph Pattern Comprehension [53.6373473053431]
This work introduces a benchmark to assess large language models' capabilities in graph pattern tasks.<n>We have developed a benchmark that evaluates whether LLMs can understand graph patterns based on either terminological or topological descriptions.<n>Our benchmark encompasses both synthetic and real datasets, and a variety of models, with a total of 11 tasks and 7 models.
arXiv Detail & Related papers (2024-10-04T04:48:33Z) - Learning to Model Graph Structural Information on MLPs via Graph Structure Self-Contrasting [50.181824673039436]
We propose a Graph Structure Self-Contrasting (GSSC) framework that learns graph structural information without message passing.
The proposed framework is based purely on Multi-Layer Perceptrons (MLPs), where the structural information is only implicitly incorporated as prior knowledge.
It first applies structural sparsification to remove potentially uninformative or noisy edges in the neighborhood, and then performs structural self-contrasting in the sparsified neighborhood to learn robust node representations.
arXiv Detail & Related papers (2024-09-09T12:56:02Z) - Spectral Graph Reasoning Network for Hyperspectral Image Classification [0.43512163406551996]
Convolutional neural networks (CNNs) have achieved remarkable performance in hyperspectral image (HSI) classification.
We propose a spectral graph reasoning network (SGR) learning framework comprising two crucial modules.
Experiments on two HSI datasets demonstrate that the proposed architecture can significantly improve the classification accuracy.
arXiv Detail & Related papers (2024-07-02T20:29:23Z) - A Pure Transformer Pretraining Framework on Text-attributed Graphs [50.833130854272774]
We introduce a feature-centric pretraining perspective by treating graph structure as a prior.
Our framework, Graph Sequence Pretraining with Transformer (GSPT), samples node contexts through random walks.
GSPT can be easily adapted to both node classification and link prediction, demonstrating promising empirical success on various datasets.
arXiv Detail & Related papers (2024-06-19T22:30:08Z) - Multi-View Empowered Structural Graph Wordification for Language Models [12.22063024099311]
We introduce an end-to-end modality-aligning framework for LLM-graph alignment: Dual-Residual Vector Quantized-Variational AutoEncoder, namely Dr.E.<n>Our approach is purposefully designed to facilitate token-level alignment with LLMs, enabling an effective translation of the intrinsic'of graphs into comprehensible natural language.<n>Our framework ensures certain visual interpretability, efficiency, and robustness, marking the promising successful endeavor to achieve token-level alignment between LLMs and GNNs.
arXiv Detail & Related papers (2024-06-19T16:43:56Z) - HoloNets: Spectral Convolutions do extend to Directed Graphs [59.851175771106625]
Conventional wisdom dictates that spectral convolutional networks may only be deployed on undirected graphs.
Here we show this traditional reliance on the graph Fourier transform to be superfluous.
We provide a frequency-response interpretation of newly developed filters, investigate the influence of the basis used to express filters and discuss the interplay with characteristic operators on which networks are based.
arXiv Detail & Related papers (2023-10-03T17:42:09Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.