MIDOG 2025 Track 2: A Deep Learning Model for Classification of Atypical and Normal Mitotic Figures under Class and Hardness Imbalances
- URL: http://arxiv.org/abs/2509.10502v1
- Date: Mon, 01 Sep 2025 15:12:05 GMT
- Title: MIDOG 2025 Track 2: A Deep Learning Model for Classification of Atypical and Normal Mitotic Figures under Class and Hardness Imbalances
- Abstract summary: We propose a novel deep learning approach based on a ResNet backbone with specialized classification heads.<n>Our architecture uniquely models both the mitotic figure phenotype and the instance difficulty simultaneously.
- Score: 0.0
- License: http://creativecommons.org/licenses/by-nc-nd/4.0/
- Abstract: Motivation: Accurate classification of mitotic figures into normal and atypical types is crucial for tumor prognostication in digital pathology. However, developing robust deep learning models for this task is challenging due to the subtle morphological differences, as well as significant class and hardness imbalances in real-world histopathology datasets. Methods: We propose a novel deep learning approach based on a ResNet backbone with specialized classification heads. Our architecture uniquely models both the mitotic figure phenotype and the instance difficulty simultaneously. This method is specifically designed to handle the challenges of diverse tissue types, scanner variability, and imbalanced data. We employed focal loss to effectively mitigate the pronounced class imbalance, and a comprehensive data augmentation pipeline was implemented to enhance the model's robustness and generalizability. Results: Our approach demonstrated strong and consistent performance. In a 5-fold cross-validation on the MIDOG 2025 Track 2 dataset, it achieved a mean balanced accuracy of 0.8744 +/- 0.0093 and an ROC AUC of 0.9505 +/- 0.029. The model showed robust generalization across preliminary leaderboard evaluations, achieving an overall balanced accuracy of 0.8736 +/- 0.0204. Conclusion: The proposed method offers a reliable and generalizable solution for the classification of atypical and normal mitotic figures. By addressing the inherent challenges of real world data, our approach has the potential to support precise prognostic assessments in clinical practice and improve consistency in pathological diagnosis.
Related papers
- Dementia Etiology Diagnosis via Collaborative Meta Knowledge Enhancement [81.27196033392559]
We propose a Collaborative Meta Knowledge Enhancement (COME) framework for dementia etiology diagnosis.<n>COME injects multi-center acquisition semantics, source identifiers, and modality indicators as heterogeneity-aware embeddings into a unified Transformer architecture for scale-up training.<n>Our method achieves state-of-the-art in-domain performance with a mean macro-averaged AUC of 85.62% and a 4.29-point gain over the strongest baseline.
arXiv Detail & Related papers (2026-07-24T04:26:47Z) - The Good, the Bad, and the Brittle: Benchmarking Robustness and Generalisation of Histopathology Foundation Models [0.1274452325287335]
We benchmarked twelve pathology foundation models (PFMs) and ResNet baselines.<n>PFMs consistently outperform CNNs in both robustness and domain generalisation, yet model scaling shows diminishing returns.<n> NR-Kfold analysis reveals systematic accuracy loss and increased variability when training-test similarity is broken.
arXiv Detail & Related papers (2026-07-05T16:49:09Z) - Delving Aleatoric Uncertainty in Medical Image Segmentation via Vision Foundation Models [56.29123284262618]
This work proposes leveraging the universal representation capabilities of visual foundation models to estimate inherent data uncertainty.<n>We analyze the feature diversity of the model's decoded representations and quantify their singular value energy to define the semantic perception scale for each class.<n>Based on this foundation, we design two uncertainty-driven application strategies: (1) the aleatoric uncertainty-aware data filtering mechanism to eliminate potentially noisy samples and enhance model learning quality; and (2) the dynamic uncertainty-aware optimization strategy that adaptively adjusts class-specific loss weights during training based on the semantic perception scale, combined with a label denoising mechanism to improve training stability
arXiv Detail & Related papers (2026-04-13T03:59:54Z) - Investigating the Impact of Histopathological Foundation Models on Regressive Prediction of Homologous Recombination Deficiency [52.50039435394964]
We systematically evaluate foundation models for regression-based tasks.<n>We extract patch-level features from whole slide images (WSI) using five state-of-the-art foundation models.<n>Models are trained to predict continuous HRD scores based on these extracted features across breast, endometrial, and lung cancer cohorts.
arXiv Detail & Related papers (2026-01-29T14:06:50Z) - Robust Atypical Mitosis Classification with DenseNet121: Stain-Aware Augmentation and Hybrid Loss for Domain Generalization [16.048949963804123]
We present a DenseNet-121-based framework tailored for atypical mitosis classification in the MIDOG 2025 (Track 2) setting.<n>Our method integrates stain-aware augmentation (Macenko), geometric and intensity transformations, and imbalance-aware learning via weighted sampling with a hybrid objective combining class-weighted binary cross-entropy and focal loss.<n> Trained end-to-end with AdamW and evaluated across multiple independent domains, the model demonstrates strong generalization under scanner and staining shifts, achieving balanced accuracy 85.0%, AUROC 0.927, sensitivity 89.2%, and specificity 80.9% on the official test set.
arXiv Detail & Related papers (2025-10-26T11:24:55Z) - ConvNeXt with Histopathology-Specific Augmentations for Mitotic Figure Classification [1.398256265458105]
We propose a solution based on the lightweight ConvNeXt architecture to maximize domain coverage.<n>On the preliminary leaderboard, our model achieved a balanced accuracy of 0.8961, ranking among the top entries.
arXiv Detail & Related papers (2025-08-29T13:18:32Z) - Pan-Cancer mitotic figures detection and domain generalization: MIDOG 2025 Challenge [0.0]
This report details our submission to the Mitotic Domain Generalization (MIDOG) 2025 challenge.<n>It addresses the critical task of mitotic figure detection in histopathology for cancer prognostication.<n>We release two new datasets to bolster training data for both conventional citeShen2024framework and atypical mitoses citeshen025_16780587.
arXiv Detail & Related papers (2025-08-28T16:11:58Z) - Deep Learning for Glioblastoma Morpho-pathological Features Identification: A BraTS-Pathology Challenge Solution [5.347187213114967]
We present our approach to the BraTS-Path Challenge 2024.<n>We leverage a pre-trained model and fine-tune it on the BraTS-Path training dataset.<n>Our model exhibits perfect specificity of 0.898704, showing an exceptional capacity to correctly classify negative cases.
arXiv Detail & Related papers (2025-07-24T06:47:23Z) - The Skin Game: Revolutionizing Standards for AI Dermatology Model Comparison [0.6144680854063939]
Deep Learning approaches in dermatological image classification have shown promising results, yet the field faces significant methodological challenges that impede proper evaluation.<n>This paper presents a systematic analysis of current methodological practices in skin disease classification research, revealing substantial inconsistencies in data preparation, augmentation strategies, and performance reporting.<n>We propose comprehensive methodological recommendations for model development, evaluation, and clinical deployment, emphasizing rigorous data preparation, systematic error analysis, and specialized protocols for different image types.
arXiv Detail & Related papers (2025-02-04T17:15:36Z) - Transformer-Based Self-Supervised Learning for Histopathological Classification of Ischemic Stroke Clot Origin [0.0]
Identifying the thromboembolism source in ischemic stroke is crucial for treatment and secondary prevention.
This study describes a self-supervised deep learning approach in digital pathology of emboli for classifying ischemic stroke clot origin.
arXiv Detail & Related papers (2024-05-01T23:40:12Z) - Class-Imbalanced Graph Learning without Class Rebalancing [62.1368829847041]
Class imbalance is prevalent in real-world node classification tasks and poses great challenges for graph learning models.
In this work, we approach the root cause of class-imbalance bias from an topological paradigm.
We devise a lightweight topological augmentation framework BAT to mitigate the class-imbalance bias without class rebalancing.
arXiv Detail & Related papers (2023-08-27T19:01:29Z) - TWINS: A Fine-Tuning Framework for Improved Transferability of
Adversarial Robustness and Generalization [89.54947228958494]
This paper focuses on the fine-tuning of an adversarially pre-trained model in various classification tasks.
We propose a novel statistics-based approach, Two-WIng NormliSation (TWINS) fine-tuning framework.
TWINS is shown to be effective on a wide range of image classification datasets in terms of both generalization and robustness.
arXiv Detail & Related papers (2023-03-20T14:12:55Z) - DeepTechnome: Mitigating Unknown Bias in Deep Learning Based Assessment
of CT Images [44.62475518267084]
We debias deep learning models during training against unknown bias.
We use control regions as surrogates that carry information regarding the bias.
Applying the proposed method to learn from data exhibiting a strong bias, it near-perfectly recovers the classification performance observed when training with corresponding unbiased data.
arXiv Detail & Related papers (2022-05-26T12:18:48Z) - On the explainability of hospitalization prediction on a large COVID-19
patient dataset [45.82374977939355]
We develop various AI models to predict hospitalization on a large (over 110$k$) cohort of COVID-19 positive-tested US patients.
Despite high data unbalance, the models reach average precision 0.96-0.98 (0.75-0.85), recall 0.96-0.98 (0.74-0.85), and $F_score 0.97-0.98 (0.79-0.83) on the non-hospitalized (or hospitalized) class.
arXiv Detail & Related papers (2021-10-28T10:23:38Z) - A multi-stage machine learning model on diagnosis of esophageal
manometry [50.591267188664666]
The framework includes deep-learning models at the swallow-level stage and feature-based machine learning models at the study-level stage.
This is the first artificial-intelligence-style model to automatically predict CC diagnosis of HRM study from raw multi-swallow data.
arXiv Detail & Related papers (2021-06-25T20:09:23Z) - Bootstrapping Your Own Positive Sample: Contrastive Learning With
Electronic Health Record Data [62.29031007761901]
This paper proposes a novel contrastive regularized clinical classification model.
We introduce two unique positive sampling strategies specifically tailored for EHR data.
Our framework yields highly competitive experimental results in predicting the mortality risk on real-world COVID-19 EHR data.
arXiv Detail & Related papers (2021-04-07T06:02:04Z) - Semi-supervised Medical Image Classification with Relation-driven
Self-ensembling Model [71.80319052891817]
We present a relation-driven semi-supervised framework for medical image classification.
It exploits the unlabeled data by encouraging the prediction consistency of given input under perturbations.
Our method outperforms many state-of-the-art semi-supervised learning methods on both single-label and multi-label image classification scenarios.
arXiv Detail & Related papers (2020-05-15T06:57:54Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.