Topological Simplification in Predictive Coding Networks
- URL: http://arxiv.org/abs/2608.02816v1
- Date: Mon, 03 Aug 2026 19:12:11 GMT
- Title: Topological Simplification in Predictive Coding Networks
- Abstract summary: We study the topology of learned in predictive coding networks (PCNs) using a quantitative-wise persistent homology analysis.<n>Results suggest that persistent homology offers a useful lens on the compression--reconstruction and layers in PCNs.
- Score: 0.8399542059465145
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: We study the topology of learned representations in predictive coding networks (PCNs), a neuro-inspired bidirectional architecture, using a quantitative layer-wise persistent homology analysis. We train well-performing PCNs on a synthetic classification dataset ($\geq 99.9\%$ test accuracy) and on MNIST ($\geq 95\%$ test accuracy), and measure how topological features change across layers for different architectures and activation functions. We find that smaller PCNs collapse connected components across layers earlier than larger models (Spearman $\unicode{x1D70C} \in [0.72, 0.79]$ across activations), with model size measured as the sum of hidden-layer widths. We also observe a strong negative correlation ($\unicode{x1D70C} = -0.58$) between the depth at which simplification occurs and reconstruction error; i.e., architectures that simplify later reconstruct better. Finally, a seed-level bootstrap comparison across architectures and activations shows that PCNs consistently collapse connected components later than matched MLPs, with an average difference of $3.6$ layers. These results suggest that persistent homology offers a useful quantitative lens on the compression--reconstruction tradeoff in PCNs, and that both model capacity and the recurrent, bidirectional dynamics of predictive coding inference shape when this tradeoff is resolved across layers.
Related papers
- On the Geometric Structure of Layer Updates in Deep Language Models [0.0]
We study the geometric structure of layer updates in deep language models.<n>We show that layerwise updates admit a decomposition into a dominant tokenwise component and a residual that is not captured by restricted tokenwise function classes.
arXiv Detail & Related papers (2026-04-02T18:44:34Z) - DuaDeep-SeqAffinity: Dual-Stream Deep Learning Framework for Sequence-Only Antigen-Antibody Affinity Prediction [0.0]
Traditional computational approaches often rely on experimentally determined 3D structures, which are scarce and computationally expensive to obtain.<n>This paper introduces DuaDeep-SeqAffinity, a novel sequence-only deep learning framework that predicts affinity scores solely from their amino acid sequences.<n>Our approach leverages pre-trained ESM-2 protein language model embeddings, combining 1D Convolutional Neural Networks (CNNs) for local motif detection with Transformer encoders for global contextual representation.
arXiv Detail & Related papers (2025-12-26T12:06:59Z) - Protein Structure Tokenization via Geometric Byte Pair Encoding [36.39587248348813]
We introduce GeoBPE, a principled protein structure tokenizers (PSTs)<n>GeoBPE transforms continuous, noisy, multi-scale backbone conformations into discrete sentences'' of geometry while enforcing global constraints.<n>It offers compression ($>$10x reduction in bits-per-residue at similar distortion rate), data efficiency ($>$10x less training data), and generalization.
arXiv Detail & Related papers (2025-11-13T22:53:29Z) - On Characterizing the Evolution of Embedding Space of Neural Networks
using Algebraic Topology [9.537910170141467]
We study how the topology of feature embedding space changes as it passes through the layers of a well-trained deep neural network (DNN) through Betti numbers.
We demonstrate that as depth increases, a topologically complicated dataset is transformed into a simple one, resulting in Betti numbers attaining their lowest possible value.
arXiv Detail & Related papers (2023-11-08T10:45:12Z) - Layer-wise Linear Mode Connectivity [52.6945036534469]
Averaging neural network parameters is an intuitive method for the knowledge of two independent models.
It is most prominently used in federated learning.
We analyse the performance of the models that result from averaging single, or groups.
arXiv Detail & Related papers (2023-07-13T09:39:10Z) - Improved Convergence Guarantees for Shallow Neural Networks [91.3755431537592]
We prove convergence of depth 2 neural networks, trained via gradient descent, to a global minimum.
Our model has the following features: regression with quadratic loss function, fully connected feedforward architecture, RelU activations, Gaussian data instances, adversarial labels.
They strongly suggest that, at least in our model, the convergence phenomenon extends well beyond the NTK regime''
arXiv Detail & Related papers (2022-12-05T14:47:52Z) - Compact representations of convolutional neural networks via weight
pruning and quantization [63.417651529192014]
We propose a novel storage format for convolutional neural networks (CNNs) based on source coding and leveraging both weight pruning and quantization.
We achieve a reduction of space occupancy up to 0.6% on fully connected layers and 5.44% on the whole network, while performing at least as competitive as the baseline.
arXiv Detail & Related papers (2021-08-28T20:39:54Z) - Understanding Self-supervised Learning with Dual Deep Networks [74.92916579635336]
We propose a novel framework to understand contrastive self-supervised learning (SSL) methods that employ dual pairs of deep ReLU networks.
We prove that in each SGD update of SimCLR with various loss functions, the weights at each layer are updated by a emphcovariance operator.
To further study what role the covariance operator plays and which features are learned in such a process, we model data generation and augmentation processes through a emphhierarchical latent tree model (HLTM)
arXiv Detail & Related papers (2020-10-01T17:51:49Z) - Dual-constrained Deep Semi-Supervised Coupled Factorization Network with
Enriched Prior [80.5637175255349]
We propose a new enriched prior based Dual-constrained Deep Semi-Supervised Coupled Factorization Network, called DS2CF-Net.
To ex-tract hidden deep features, DS2CF-Net is modeled as a deep-structure and geometrical structure-constrained neural network.
Our network can obtain state-of-the-art performance for representation learning and clustering.
arXiv Detail & Related papers (2020-09-08T13:10:21Z) - The Heterogeneity Hypothesis: Finding Layer-Wise Differentiated Network
Architectures [179.66117325866585]
We investigate a design space that is usually overlooked, i.e. adjusting the channel configurations of predefined networks.
We find that this adjustment can be achieved by shrinking widened baseline networks and leads to superior performance.
Experiments are conducted on various networks and datasets for image classification, visual tracking and image restoration.
arXiv Detail & Related papers (2020-06-29T17:59:26Z) - DC-NAS: Divide-and-Conquer Neural Architecture Search [108.57785531758076]
We present a divide-and-conquer (DC) approach to effectively and efficiently search deep neural architectures.
We achieve a $75.1%$ top-1 accuracy on the ImageNet dataset, which is higher than that of state-of-the-art methods using the same search space.
arXiv Detail & Related papers (2020-05-29T09:02:16Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.