Towards explainable message passing networks for predicting carbon
dioxide adsorption in metal-organic frameworks
- URL: http://arxiv.org/abs/2012.03723v1
- Date: Wed, 2 Dec 2020 12:54:26 GMT
- Title: Towards explainable message passing networks for predicting carbon
dioxide adsorption in metal-organic frameworks
- Authors: Ali Raza, Faaiq Waqar, Arni Sturluson, Cory Simon, Xiaoli Fern
- Abstract summary: Metal-organic framework (MOFs) are nanoporous materials that could be used to capture carbon dioxide from the exhaust gas of fossil fuel power plants.
In this work, we design and train a message passing neural network (MPNN) to predict simulated CO$$ in MOFs.
- Score: 2.1445455835823624
- License: http://creativecommons.org/licenses/by-nc-nd/4.0/
- Abstract: Metal-organic framework (MOFs) are nanoporous materials that could be used to
capture carbon dioxide from the exhaust gas of fossil fuel power plants to
mitigate climate change. In this work, we design and train a message passing
neural network (MPNN) to predict simulated CO$_2$ adsorption in MOFs. Towards
providing insights into what substructures of the MOFs are important for the
prediction, we introduce a soft attention mechanism into the readout function
that quantifies the contributions of the node representations towards the graph
representations. We investigate different mechanisms for sparse attention to
ensure only the most relevant substructures are identified.
Related papers
- MOFFlow: Flow Matching for Structure Prediction of Metal-Organic Frameworks [42.61784133509237]
Metal-organic frameworks (MOFs) are a class of crystalline materials with promising applications in many areas such as carbon capture and drug delivery.
Existing approaches, including ab initio calculations and even deep generative models, struggle with the complexity of MOF structures due to the large number of atoms in the unit cells.
We introduce MOFFlow, the first deep generative model tailored for MOF structure prediction.
arXiv Detail & Related papers (2024-10-07T13:51:58Z) - Neural Message Passing Induced by Energy-Constrained Diffusion [79.9193447649011]
We propose an energy-constrained diffusion model as a principled interpretable framework for understanding the mechanism of MPNNs.
We show that the new model can yield promising performance for cases where the data structures are observed (as a graph), partially observed or completely unobserved.
arXiv Detail & Related papers (2024-09-13T17:54:41Z) - MOFDiff: Coarse-grained Diffusion for Metal-Organic Framework Design [4.819734936375677]
Metal-organic frameworks (MOFs) are of immense interest in applications such as gas storage and carbon capture.
We propose MOFDiff: a coarse-grained (CG) diffusion model that generates CG MOF structures.
We evaluate our model's capability to generate valid and novel MOF structures and its effectiveness in designing outstanding MOF materials.
arXiv Detail & Related papers (2023-10-16T18:00:15Z) - On the importance of catalyst-adsorbate 3D interactions for relaxed
energy predictions [98.70797778496366]
We investigate whether it is possible to predict a system's relaxed energy in the OC20 dataset while ignoring the relative position of the adsorbate.
We find that while removing binding site information impairs accuracy as expected, modified models are able to predict relaxed energies with remarkably decent MAE.
arXiv Detail & Related papers (2023-10-10T14:57:04Z) - A generative artificial intelligence framework based on a molecular
diffusion model for the design of metal-organic frameworks for carbon capture [3.7693836475281297]
GHP-MOFassemble is a generative artificial intelligence framework for the rational and accelerated design of MOFs with high CO2 capacity and synthesizable linkers.
GHP-MOFassemble screens and validates AI-generated MOFs for uniqueness, synthesizability, structural validity.
We present the top six AI-generated MOFs with CO2 capacities greater than 2 $m mol/g$, higher than 96.9% of structures in the hypothetical MOF dataset.
arXiv Detail & Related papers (2023-06-14T18:32:26Z) - Multi-Task Mixture Density Graph Neural Networks for Predicting Cu-based
Single-Atom Alloy Catalysts for CO2 Reduction Reaction [61.9212585617803]
Graph neural networks (GNNs) have drawn more and more attention from material scientists.
We develop a multi-task (MT) architecture based on DimeNet++ and mixture density networks to improve the performance of such task.
arXiv Detail & Related papers (2022-09-15T13:52:15Z) - Prediction of $\textrm{CO}_2$ Adsorption in Nano-Pores with Graph Neural
Networks [2.6424064030995957]
Our model is based solely on standard structural input files containing atomistic descriptions of the adsorbent material candidates.
We construct novel methodological extensions to match the prediction accuracy of classical machine learning models.
Our approach can be more broadly applied to optimize gas capture processes at industrial scale.
arXiv Detail & Related papers (2022-08-22T04:22:21Z) - Graph neural networks for the prediction of molecular structure-property
relationships [59.11160990637615]
Graph neural networks (GNNs) are a novel machine learning method that directly work on the molecular graph.
GNNs allow to learn properties in an end-to-end fashion, thereby avoiding the need for informative descriptors.
We describe the fundamentals of GNNs and demonstrate the application of GNNs via two examples for molecular property prediction.
arXiv Detail & Related papers (2022-07-25T11:30:44Z) - Building Open Knowledge Graph for Metal-Organic Frameworks (MOF-KG):
Challenges and Case Studies [63.61566811532431]
Metal-Organic Frameworks (MOFs) have great potential to revolutionize applications such as gas storage, molecular separations, chemical sensing, crystalline and drug delivery.
The Cambridge Structural Database (CSD) reports 10,636 synthesized MOF crystals which in addition contains ca. 114,373 MOF-like structures.
In this demo paper, we describe our effort on leveraging knowledge graph methods to facilitate MOF prediction, discovery, and synthesis.
arXiv Detail & Related papers (2022-07-10T16:41:11Z) - Multi-View Graph Neural Networks for Molecular Property Prediction [67.54644592806876]
We present Multi-View Graph Neural Network (MV-GNN), a multi-view message passing architecture.
In MV-GNN, we introduce a shared self-attentive readout component and disagreement loss to stabilize the training process.
We further boost the expressive power of MV-GNN by proposing a cross-dependent message passing scheme.
arXiv Detail & Related papers (2020-05-17T04:46:07Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.