More than meets the eye: Self-supervised depth reconstruction from brain
activity
- URL: http://arxiv.org/abs/2106.05113v1
- Date: Wed, 9 Jun 2021 14:46:09 GMT
- Title: More than meets the eye: Self-supervised depth reconstruction from brain
activity
- Authors: Guy Gaziv, Michal Irani
- Abstract summary: We show that dense 3D depth maps of observed 2D natural images can also be recovered directly from fMRI brain recordings.
We use an off-the-shelf method to estimate the unknown depth maps of natural images.
The estimated depth maps are then used as an auxiliary reconstruction criterion to train for depth reconstruction directly from fMRI.
- Score: 16.269923100433232
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: In the past few years, significant advancements were made in reconstruction
of observed natural images from fMRI brain recordings using deep-learning
tools. Here, for the first time, we show that dense 3D depth maps of observed
2D natural images can also be recovered directly from fMRI brain recordings. We
use an off-the-shelf method to estimate the unknown depth maps of natural
images. This is applied to both: (i) the small number of images presented to
subjects in an fMRI scanner (images for which we have fMRI recordings -
referred to as "paired" data), and (ii) a very large number of natural images
with no fMRI recordings ("unpaired data"). The estimated depth maps are then
used as an auxiliary reconstruction criterion to train for depth reconstruction
directly from fMRI. We propose two main approaches: Depth-only recovery and
joint image-depth RGBD recovery. Because the number of available "paired"
training data (images with fMRI) is small, we enrich the training data via
self-supervised cycle-consistent training on many "unpaired" data (natural
images & depth maps without fMRI). This is achieved using our newly defined and
trained Depth-based Perceptual Similarity metric as a reconstruction criterion.
We show that predicting the depth map directly from fMRI outperforms its
indirect sequential recovery from the reconstructed images. We further show
that activations from early cortical visual areas dominate our depth
reconstruction results, and propose means to characterize fMRI voxels by their
degree of depth-information tuning. This work adds an important layer of
decoded information, extending the current envelope of visual brain decoding
capabilities.
Related papers
- Volumetric Reconstruction Resolves Off-Resonance Artifacts in Static and
Dynamic PROPELLER MRI [76.60362295758596]
Off-resonance artifacts in magnetic resonance imaging (MRI) are visual distortions that occur when the actual resonant frequencies of spins within the imaging volume differ from the expected frequencies used to encode spatial information.
We propose to resolve these artifacts by lifting the 2D MRI reconstruction problem to 3D, introducing an additional "spectral" dimension to model this off-resonance.
arXiv Detail & Related papers (2023-11-22T05:44:51Z) - fMRI-PTE: A Large-scale fMRI Pretrained Transformer Encoder for
Multi-Subject Brain Activity Decoding [54.17776744076334]
We propose fMRI-PTE, an innovative auto-encoder approach for fMRI pre-training.
Our approach involves transforming fMRI signals into unified 2D representations, ensuring consistency in dimensions and preserving brain activity patterns.
Our contributions encompass introducing fMRI-PTE, innovative data transformation, efficient training, a novel learning strategy, and the universal applicability of our approach.
arXiv Detail & Related papers (2023-11-01T07:24:22Z) - CMRxRecon: An open cardiac MRI dataset for the competition of
accelerated image reconstruction [62.61209705638161]
There has been growing interest in deep learning-based CMR imaging algorithms.
Deep learning methods require large training datasets.
This dataset includes multi-contrast, multi-view, multi-slice and multi-coil CMR imaging data from 300 subjects.
arXiv Detail & Related papers (2023-09-19T15:14:42Z) - A plug-and-play synthetic data deep learning for undersampled magnetic
resonance image reconstruction [15.780203168452443]
Current deep learning methods for undersampled MRI reconstruction exhibit good performance in image de-aliasing.
We propose a deep plug-and-play method for undersampled MRI reconstruction, which effectively adapts to different sampling settings.
arXiv Detail & Related papers (2023-09-13T02:37:19Z) - Live image-based neurosurgical guidance and roadmap generation using
unsupervised embedding [53.992124594124896]
We present a method for live image-only guidance leveraging a large data set of annotated neurosurgical videos.
A generated roadmap encodes the common anatomical paths taken in surgeries in the training set.
We trained and evaluated the proposed method with a data set of 166 transsphenoidal adenomectomy procedures.
arXiv Detail & Related papers (2023-03-31T12:52:24Z) - Mind Reader: Reconstructing complex images from brain activities [16.78619734818198]
We focus on reconstructing the complex image stimuli from fMRI (functional magnetic resonance imaging) signals.
Unlike previous works that reconstruct images with single objects or simple shapes, our work aims to reconstruct image stimuli rich in semantics.
We find that incorporating an additional text modality is beneficial for the reconstruction problem compared to directly translating brain signals to images.
arXiv Detail & Related papers (2022-09-30T06:32:46Z) - Attentive Symmetric Autoencoder for Brain MRI Segmentation [56.02577247523737]
We propose a novel Attentive Symmetric Auto-encoder based on Vision Transformer (ViT) for 3D brain MRI segmentation tasks.
In the pre-training stage, the proposed auto-encoder pays more attention to reconstruct the informative patches according to the gradient metrics.
Experimental results show that our proposed attentive symmetric auto-encoder outperforms the state-of-the-art self-supervised learning methods and medical image segmentation models.
arXiv Detail & Related papers (2022-09-19T09:43:19Z) - Facial Image Reconstruction from Functional Magnetic Resonance Imaging
via GAN Inversion with Improved Attribute Consistency [5.705640492618758]
We propose a new framework to reconstruct facial images from fMRI data.
The proposed framework accomplishes two goals: (1) reconstructing clear facial images from fMRI data and (2) maintaining the consistency of semantic characteristics.
arXiv Detail & Related papers (2022-07-03T11:18:35Z) - Is Deep Image Prior in Need of a Good Education? [57.3399060347311]
Deep image prior was introduced as an effective prior for image reconstruction.
Despite its impressive reconstructive properties, the approach is slow when compared to learned or traditional reconstruction techniques.
We develop a two-stage learning paradigm to address the computational challenge.
arXiv Detail & Related papers (2021-11-23T15:08:26Z) - Natural Image Reconstruction from fMRI using Deep Learning: A Survey [5.821090056678976]
We survey the most recent deep learning methods for natural image reconstruction from fMRI.
We examine these methods in terms of architectural design, benchmark datasets, and evaluation metrics.
We discuss the strengths and limitations of existing studies and present potential future directions.
arXiv Detail & Related papers (2021-10-18T04:05:29Z) - Deep Parallel MRI Reconstruction Network Without Coil Sensitivities [4.559089047554929]
We propose a novel deep neural network architecture by mapping the robust proximal gradient scheme for fast image reconstruction in parallel MRI (pMRI) with regularization function trained from data.
The proposed network learns to adaptively combine the multi-coil images from incomplete pMRI data into a single image with homogeneous contrast, which is then passed to a nonlinear encoder to efficiently extract sparse features of the image.
arXiv Detail & Related papers (2020-08-04T08:39:36Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.