EBHI-Seg: A Novel Enteroscope Biopsy Histopathological Haematoxylin and Eosin Image Dataset for Image Segmentation Tasks

• URL: http://arxiv.org/abs/2212.00532v2
• Date: Fri, 2 Dec 2022 08:26:21 GMT
• Title: EBHI-Seg: A Novel Enteroscope Biopsy Histopathological Haematoxylin and Eosin Image Dataset for Image Segmentation Tasks
• Authors: Liyu Shi, Xiaoyan Li, Weiming Hu, Haoyuan Chen, Jing Chen, Zizhen Fan, Minghe Gao, Yujie Jing, Guotao Lu, Deguo Ma, Zhiyu Ma, Qingtao Meng, Dechao Tang, Hongzan Sun, Marcin Grzegorzek, Shouliang Qi, Yueyang Teng, Chen Li
• Abstract summary: Colorectal cancer is a common fatal malignancy, the fourth most common cancer in men, and the third most common cancer in women worldwide. There is a lack of datasets for histological image segmentation of rectal cancer, which often hampers the assessment accuracy when computer technology is used to aid in diagnosis. This dataset can provide researchers with new segmentation algorithms for medical diagnosis of colorectal cancer, which can be used in the clinical setting to help doctors and patients.
• Score: 21.17913442266469
• License: http://creativecommons.org/licenses/by/4.0/
• Abstract: Background and Purpose: Colorectal cancer is a common fatal malignancy, the fourth most common cancer in men, and the third most common cancer in women worldwide. Timely detection of cancer in its early stages is essential for treating the disease. Currently, there is a lack of datasets for histopathological image segmentation of rectal cancer, which often hampers the assessment accuracy when computer technology is used to aid in diagnosis. Methods: This present study provided a new publicly available Enteroscope Biopsy Histopathological Hematoxylin and Eosin Image Dataset for Image Segmentation Tasks (EBHI-Seg). To demonstrate the validity and extensiveness of EBHI-Seg, the experimental results for EBHI-Seg are evaluated using classical machine learning methods and deep learning methods. Results: The experimental results showed that deep learning methods had a better image segmentation performance when utilizing EBHI-Seg. The maximum accuracy of the Dice evaluation metric for the classical machine learning method is 0.948, while the Dice evaluation metric for the deep learning method is 0.965. Conclusion: This publicly available dataset contained 5,170 images of six types of tumor differentiation stages and the corresponding ground truth images. The dataset can provide researchers with new segmentation algorithms for medical diagnosis of colorectal cancer, which can be used in the clinical setting to help doctors and patients.

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