On How AI Needs to Change to Advance the Science of Drug Discovery
- URL: http://arxiv.org/abs/2212.12560v1
- Date: Fri, 23 Dec 2022 19:35:51 GMT
- Title: On How AI Needs to Change to Advance the Science of Drug Discovery
- Authors: Kieran Didi and Matej Ze\v{c}evi\'c
- Abstract summary: We present causal drug discovery as the craft of creating models that ground the process of drug discovery in causal reasoning.
In this attention paper, we present causal drug discovery as the craft of creating models that ground the process of drug discovery in causal reasoning.
- Score: 0.0
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Research around AI for Science has seen significant success since the rise of
deep learning models over the past decade, even with longstanding challenges
such as protein structure prediction. However, this fast development inevitably
made their flaws apparent -- especially in domains of reasoning where
understanding the cause-effect relationship is important. One such domain is
drug discovery, in which such understanding is required to make sense of data
otherwise plagued by spurious correlations. Said spuriousness only becomes
worse with the ongoing trend of ever-increasing amounts of data in the life
sciences and thereby restricts researchers in their ability to understand
disease biology and create better therapeutics. Therefore, to advance the
science of drug discovery with AI it is becoming necessary to formulate the key
problems in the language of causality, which allows the explication of
modelling assumptions needed for identifying true cause-effect relationships.
In this attention paper, we present causal drug discovery as the craft of
creating models that ground the process of drug discovery in causal reasoning.
Related papers
- Hypothesizing Missing Causal Variables with LLMs [55.28678224020973]
We formulate a novel task where the input is a partial causal graph with missing variables, and the output is a hypothesis about the missing variables to complete the partial graph.
We show the strong ability of LLMs to hypothesize the mediation variables between a cause and its effect.
We also observe surprising results where some of the open-source models outperform the closed GPT-4 model.
arXiv Detail & Related papers (2024-09-04T10:37:44Z) - Causal machine learning for single-cell genomics [94.28105176231739]
We discuss the application of machine learning techniques to single-cell genomics and their challenges.
We first present the model that underlies most of current causal approaches to single-cell biology.
We then identify open problems in the application of causal approaches to single-cell data.
arXiv Detail & Related papers (2023-10-23T13:35:24Z) - Inferring physical laws by artificial intelligence based causal models [3.333770856102642]
We propose a causal learning model of physical principles, which recognizes correlations and brings out casual relationships.
We show that this technique can not only figure out associations among data, but is also able to correctly ascertain the cause-and-effect relations amongst the variables.
arXiv Detail & Related papers (2023-09-08T01:50:32Z) - Causal reasoning in typical computer vision tasks [11.95181390654463]
Causal theory models the intrinsic causal structure unaffected by data bias and is effective in avoiding spurious correlations.
This paper aims to comprehensively review the existing causal methods in typical vision and vision-language tasks such as semantic segmentation, object detection, and image captioning.
Future roadmaps are also proposed, including facilitating the development of causal theory and its application in other complex scenes and systems.
arXiv Detail & Related papers (2023-07-26T07:01:57Z) - A Causal Framework for Decomposing Spurious Variations [68.12191782657437]
We develop tools for decomposing spurious variations in Markovian and Semi-Markovian models.
We prove the first results that allow a non-parametric decomposition of spurious effects.
The described approach has several applications, ranging from explainable and fair AI to questions in epidemiology and medicine.
arXiv Detail & Related papers (2023-06-08T09:40:28Z) - A Survey on Causal Discovery: Theory and Practice [2.741266294612776]
Causal inference is designed to quantify the underlying relationships that connect a cause to its effect.
In this paper, we explore recent advancements in a unified manner, provide a consistent overview of existing algorithms, report useful tools and data, present real-world applications.
arXiv Detail & Related papers (2023-05-17T08:18:56Z) - Causal Deep Learning [77.49632479298745]
Causality has the potential to transform the way we solve real-world problems.
But causality often requires crucial assumptions which cannot be tested in practice.
We propose a new way of thinking about causality -- we call this causal deep learning.
arXiv Detail & Related papers (2023-03-03T19:19:18Z) - Learning to Discover Medicines [21.744555824342264]
Modern AI-enabled by powerful computing, large biomedical databases, and breakthroughs in deep learning-offers a new hope to break this loop.
In this paper we review recent advances in AI methodologies that aim to crack this challenge.
We organize the vast and rapidly growing literature of AI for drug discovery into three relatively stable sub-areas.
arXiv Detail & Related papers (2022-02-14T23:43:51Z) - ACRE: Abstract Causal REasoning Beyond Covariation [90.99059920286484]
We introduce the Abstract Causal REasoning dataset for systematic evaluation of current vision systems in causal induction.
Motivated by the stream of research on causal discovery in Blicket experiments, we query a visual reasoning system with the following four types of questions in either an independent scenario or an interventional scenario.
We notice that pure neural models tend towards an associative strategy under their chance-level performance, whereas neuro-symbolic combinations struggle in backward-blocking reasoning.
arXiv Detail & Related papers (2021-03-26T02:42:38Z) - Towards Causal Representation Learning [96.110881654479]
The two fields of machine learning and graphical causality arose and developed separately.
There is now cross-pollination and increasing interest in both fields to benefit from the advances of the other.
arXiv Detail & Related papers (2021-02-22T15:26:57Z) - Estimation of Causal Effects in the Presence of Unobserved Confounding
in the Alzheimer's Continuum [3.2489082010225494]
We derive a causal graph from the current clinical knowledge on cause and effect in the Alzheimer's disease continuum.
We show that identifiability of the causal effect requires all confounders to be known and measured.
In our theoretical analysis, we prove that using the substitute confounder enables identifiability of the causal effect of neuroanatomy on cognition.
arXiv Detail & Related papers (2020-06-23T16:29:54Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.