Imbalanced Domain Generalization for Robust Single Cell Classification in Hematological Cytomorphology

• URL: http://arxiv.org/abs/2303.07771v3
• Date: Tue, 18 Apr 2023 10:33:29 GMT
• Title: Imbalanced Domain Generalization for Robust Single Cell Classification in Hematological Cytomorphology
• Authors: Rao Muhammad Umer, Armin Gruber, Sayedali Shetab Boushehri, Christian Metak, Carsten Marr
• Abstract summary: We train a robust CNN for WBC classification by addressing cross-domain data imbalance and domain shifts. Our approach achieves the best F1 macro score compared to other existing methods.
• Score: 3.7007225479462402
• License: http://creativecommons.org/licenses/by-nc-sa/4.0/
• Abstract: Accurate morphological classification of white blood cells (WBCs) is an important step in the diagnosis of leukemia, a disease in which nonfunctional blast cells accumulate in the bone marrow. Recently, deep convolutional neural networks (CNNs) have been successfully used to classify leukocytes by training them on single-cell images from a specific domain. Most CNN models assume that the distributions of the training and test data are similar, i.e., the data are independently and identically distributed. Therefore, they are not robust to different staining procedures, magnifications, resolutions, scanners, or imaging protocols, as well as variations in clinical centers or patient cohorts. In addition, domain-specific data imbalances affect the generalization performance of classifiers. Here, we train a robust CNN for WBC classification by addressing cross-domain data imbalance and domain shifts. To this end, we use two loss functions and demonstrate their effectiveness in out-of-distribution (OOD) generalization. Our approach achieves the best F1 macro score compared to other existing methods and is able to consider rare cell types. This is the first demonstration of imbalanced domain generalization in hematological cytomorphology and paves the way for robust single cell classification methods for the application in laboratories and clinics.

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