PCDAL: A Perturbation Consistency-Driven Active Learning Approach for
Medical Image Segmentation and Classification
- URL: http://arxiv.org/abs/2306.16918v1
- Date: Thu, 29 Jun 2023 13:11:46 GMT
- Title: PCDAL: A Perturbation Consistency-Driven Active Learning Approach for
Medical Image Segmentation and Classification
- Authors: Tao Wang, Xinlin Zhang, Yuanbo Zhou, Junlin Lan, Tao Tan, Min Du,
Qinquan Gao and Tong Tong
- Abstract summary: Supervised learning deeply relies on large-scale annotated data, which is expensive, time-consuming, and impractical to acquire in medical imaging applications.
Active Learning (AL) methods have been widely applied in natural image classification tasks to reduce annotation costs.
We propose an AL-based method that can be simultaneously applied to 2D medical image classification, segmentation, and 3D medical image segmentation tasks.
- Score: 12.560273908522714
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: In recent years, deep learning has become a breakthrough technique in
assisting medical image diagnosis. Supervised learning using convolutional
neural networks (CNN) provides state-of-the-art performance and has served as a
benchmark for various medical image segmentation and classification. However,
supervised learning deeply relies on large-scale annotated data, which is
expensive, time-consuming, and even impractical to acquire in medical imaging
applications. Active Learning (AL) methods have been widely applied in natural
image classification tasks to reduce annotation costs by selecting more
valuable examples from the unlabeled data pool. However, their application in
medical image segmentation tasks is limited, and there is currently no
effective and universal AL-based method specifically designed for 3D medical
image segmentation. To address this limitation, we propose an AL-based method
that can be simultaneously applied to 2D medical image classification,
segmentation, and 3D medical image segmentation tasks. We extensively validated
our proposed active learning method on three publicly available and challenging
medical image datasets, Kvasir Dataset, COVID-19 Infection Segmentation
Dataset, and BraTS2019 Dataset. The experimental results demonstrate that our
PCDAL can achieve significantly improved performance with fewer annotations in
2D classification and segmentation and 3D segmentation tasks. The codes of this
study are available at https://github.com/ortonwang/PCDAL.
Related papers
- Discriminative Hamiltonian Variational Autoencoder for Accurate Tumor Segmentation in Data-Scarce Regimes [2.8498944632323755]
We propose an end-to-end hybrid architecture for medical image segmentation.
We use Hamiltonian Variational Autoencoders (HVAE) and a discriminative regularization to improve the quality of generated images.
Our architecture operates on a slice-by-slice basis to segment 3D volumes, capitilizing on the richly augmented dataset.
arXiv Detail & Related papers (2024-06-17T15:42:08Z) - Modular Deep Active Learning Framework for Image Annotation: A Technical Report for the Ophthalmo-AI Project [1.7325492987380366]
We introduce MedDeepCyleAL, an end-to-end framework implementing the complete Active Learning cycle.
It provides researchers with the flexibility to choose the type of deep learning model they wish to employ.
While MedDeepCyleAL can be applied to any kind of image data, we have specifically applied it to ophthalmology data in this project.
arXiv Detail & Related papers (2024-03-22T11:53:03Z) - Primitive Geometry Segment Pre-training for 3D Medical Image
Segmentation [12.251689154843342]
We present the Primitive Geometry Segment Pre-training (PrimGeoSeg) method to enable the learning of 3D semantic features.
PrimGeoSeg performs more accurate and efficient 3D medical image segmentation without manual data collection and annotation.
arXiv Detail & Related papers (2024-01-08T04:37:35Z) - Disruptive Autoencoders: Leveraging Low-level features for 3D Medical
Image Pre-training [51.16994853817024]
This work focuses on designing an effective pre-training framework for 3D radiology images.
We introduce Disruptive Autoencoders, a pre-training framework that attempts to reconstruct the original image from disruptions created by a combination of local masking and low-level perturbations.
The proposed pre-training framework is tested across multiple downstream tasks and achieves state-of-the-art performance.
arXiv Detail & Related papers (2023-07-31T17:59:42Z) - LVM-Med: Learning Large-Scale Self-Supervised Vision Models for Medical
Imaging via Second-order Graph Matching [59.01894976615714]
We introduce LVM-Med, the first family of deep networks trained on large-scale medical datasets.
We have collected approximately 1.3 million medical images from 55 publicly available datasets.
LVM-Med empirically outperforms a number of state-of-the-art supervised, self-supervised, and foundation models.
arXiv Detail & Related papers (2023-06-20T22:21:34Z) - PCA: Semi-supervised Segmentation with Patch Confidence Adversarial
Training [52.895952593202054]
We propose a new semi-supervised adversarial method called Patch Confidence Adrial Training (PCA) for medical image segmentation.
PCA learns the pixel structure and context information in each patch to get enough gradient feedback, which aids the discriminator in convergent to an optimal state.
Our method outperforms the state-of-the-art semi-supervised methods, which demonstrates its effectiveness for medical image segmentation.
arXiv Detail & Related papers (2022-07-24T07:45:47Z) - Self-Paced Contrastive Learning for Semi-supervisedMedical Image
Segmentation with Meta-labels [6.349708371894538]
We propose to adapt contrastive learning to work with meta-label annotations.
We use the meta-labels for pre-training the image encoder as well as to regularize a semi-supervised training.
Results on three different medical image segmentation datasets show that our approach highly boosts the performance of a model trained on a few scans.
arXiv Detail & Related papers (2021-07-29T04:30:46Z) - Positional Contrastive Learning for Volumetric Medical Image
Segmentation [13.086140606803408]
We propose a novel positional contrastive learning framework to generate contrastive data pairs.
The proposed PCL method can substantially improve the segmentation performance compared to existing methods in both semi-supervised setting and transfer learning setting.
arXiv Detail & Related papers (2021-06-16T22:15:28Z) - Few-shot Medical Image Segmentation using a Global Correlation Network
with Discriminative Embedding [60.89561661441736]
We propose a novel method for few-shot medical image segmentation.
We construct our few-shot image segmentor using a deep convolutional network trained episodically.
We enhance discriminability of deep embedding to encourage clustering of the feature domains of the same class.
arXiv Detail & Related papers (2020-12-10T04:01:07Z) - Weakly-supervised Learning For Catheter Segmentation in 3D Frustum
Ultrasound [74.22397862400177]
We propose a novel Frustum ultrasound based catheter segmentation method.
The proposed method achieved the state-of-the-art performance with an efficiency of 0.25 second per volume.
arXiv Detail & Related papers (2020-10-19T13:56:22Z) - Robust Medical Instrument Segmentation Challenge 2019 [56.148440125599905]
Intraoperative tracking of laparoscopic instruments is often a prerequisite for computer and robotic-assisted interventions.
Our challenge was based on a surgical data set comprising 10,040 annotated images acquired from a total of 30 surgical procedures.
The results confirm the initial hypothesis, namely that algorithm performance degrades with an increasing domain gap.
arXiv Detail & Related papers (2020-03-23T14:35:08Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.