Bayesian longitudinal tensor response regression for modeling
neuroplasticity
- URL: http://arxiv.org/abs/2309.10065v2
- Date: Wed, 18 Oct 2023 17:30:41 GMT
- Title: Bayesian longitudinal tensor response regression for modeling
neuroplasticity
- Authors: Suprateek Kundu, Alec Reinhardt, Serena Song, Joo Han, M. Lawson
Meadows, Bruce Crosson, Venkatagiri Krishnamurthy
- Abstract summary: A major interest in longitudinal neuroimaging studies involves investigating voxel-level neuroplasticity due to treatment and other factors across visits.
We propose a novel Bayesian tensor response regression approach for longitudinal imaging data, which pools information across spatially-distributed voxels.
The proposed method is able to infer individual-level neuroplasticity, allowing for examination of personalized disease or recovery trajectories.
- Score: 0.0
- License: http://creativecommons.org/licenses/by-nc-sa/4.0/
- Abstract: A major interest in longitudinal neuroimaging studies involves investigating
voxel-level neuroplasticity due to treatment and other factors across visits.
However, traditional voxel-wise methods are beset with several pitfalls, which
can compromise the accuracy of these approaches. We propose a novel Bayesian
tensor response regression approach for longitudinal imaging data, which pools
information across spatially-distributed voxels to infer significant changes
while adjusting for covariates. The proposed method, which is implemented using
Markov chain Monte Carlo (MCMC) sampling, utilizes low-rank decomposition to
reduce dimensionality and preserve spatial configurations of voxels when
estimating coefficients. It also enables feature selection via joint credible
regions which respect the shape of the posterior distributions for more
accurate inference. In addition to group level inferences, the method is able
to infer individual-level neuroplasticity, allowing for examination of
personalized disease or recovery trajectories. The advantages of the proposed
approach in terms of prediction and feature selection over voxel-wise
regression are highlighted via extensive simulation studies. Subsequently, we
apply the approach to a longitudinal Aphasia dataset consisting of task
functional MRI images from a group of subjects who were administered either a
control intervention or intention treatment at baseline and were followed up
over subsequent visits. Our analysis revealed that while the control therapy
showed long-term increases in brain activity, the intention treatment produced
predominantly short-term changes, both of which were concentrated in distinct
localized regions. In contrast, the voxel-wise regression failed to detect any
significant neuroplasticity after multiplicity adjustments, which is
biologically implausible and implies lack of power.
Related papers
- Hierarchical uncertainty estimation for learning-based registration in neuroimaging [10.964653898591413]
We propose a principled way to propagate uncertainties (epistemic or aleatoric) estimated at the level of spatial location.
Experiments show that uncertainty-aware fitting of transformations improves the registration accuracy of brain MRI scans.
arXiv Detail & Related papers (2024-10-11T23:12:16Z) - On metric choice in dimension reduction for Fréchet regression [7.161207910629032]
Fr'echet regression is becoming a mainstay in modern data analysis for analyzing non-traditional data types.
It is especially useful in the analysis of complex health data such as continuous monitoring and imaging data.
arXiv Detail & Related papers (2024-10-02T17:39:34Z) - Seeing Unseen: Discover Novel Biomedical Concepts via
Geometry-Constrained Probabilistic Modeling [53.7117640028211]
We present a geometry-constrained probabilistic modeling treatment to resolve the identified issues.
We incorporate a suite of critical geometric properties to impose proper constraints on the layout of constructed embedding space.
A spectral graph-theoretic method is devised to estimate the number of potential novel classes.
arXiv Detail & Related papers (2024-03-02T00:56:05Z) - Deep Variational Lesion-Deficit Mapping [0.3914676152740142]
We introduce a comprehensive framework for lesion-deficit model comparison.
We show that our model outperforms established methods by a substantial margin across all simulation scenarios.
Our analysis justifies the widespread adoption of this approach.
arXiv Detail & Related papers (2023-05-27T13:49:35Z) - Prediction of brain tumor recurrence location based on multi-modal
fusion and nonlinear correlation learning [55.789874096142285]
We present a deep learning-based brain tumor recurrence location prediction network.
We first train a multi-modal brain tumor segmentation network on the public dataset BraTS 2021.
Then, the pre-trained encoder is transferred to our private dataset for extracting the rich semantic features.
Two decoders are constructed to jointly segment the present brain tumor and predict its future tumor recurrence location.
arXiv Detail & Related papers (2023-04-11T02:45:38Z) - Patched Diffusion Models for Unsupervised Anomaly Detection in Brain MRI [55.78588835407174]
We propose a method that reformulates the generation task of diffusion models as a patch-based estimation of healthy brain anatomy.
We evaluate our approach on data of tumors and multiple sclerosis lesions and demonstrate a relative improvement of 25.1% compared to existing baselines.
arXiv Detail & Related papers (2023-03-07T09:40:22Z) - Efficient Causal Inference from Combined Observational and
Interventional Data through Causal Reductions [68.6505592770171]
Unobserved confounding is one of the main challenges when estimating causal effects.
We propose a novel causal reduction method that replaces an arbitrary number of possibly high-dimensional latent confounders.
We propose a learning algorithm to estimate the parameterized reduced model jointly from observational and interventional data.
arXiv Detail & Related papers (2021-03-08T14:29:07Z) - Sparse Symmetric Tensor Regression for Functional Connectivity Analysis [13.482969034243581]
We propose a sparse symmetric tensor regression that further reduces the number of free parameters and achieves superior performance over symmetrized and ordinary CP regression.
We apply the proposed method to a study of Alzheimer's disease (AD) and normal ageing from the Berkeley Aging Cohort Study (BACS) and detect two regions of interest that have been identified important to AD.
arXiv Detail & Related papers (2020-10-28T02:07:39Z) - Statistical control for spatio-temporal MEG/EEG source imaging with
desparsified multi-task Lasso [102.84915019938413]
Non-invasive techniques like magnetoencephalography (MEG) or electroencephalography (EEG) offer promise of non-invasive techniques.
The problem of source localization, or source imaging, poses however a high-dimensional statistical inference challenge.
We propose an ensemble of desparsified multi-task Lasso (ecd-MTLasso) to deal with this problem.
arXiv Detail & Related papers (2020-09-29T21:17:16Z) - Simultaneous Estimation of X-ray Back-Scatter and Forward-Scatter using
Multi-Task Learning [59.17383024536595]
Back-scatter significantly contributes to patient (skin) dose during complicated interventions.
Forward-scattered radiation reduces contrast in projection images and introduces artifacts in 3-D reconstructions.
We propose a novel approach combining conventional techniques with learning-based methods to simultaneously estimate the forward-scatter reaching the detector.
arXiv Detail & Related papers (2020-07-08T10:47:37Z) - Image Response Regression via Deep Neural Networks [4.646077947295938]
We propose a novel nonparametric approach in the framework of spatially varying coefficient models, where the spatially varying functions are estimated through deep neural networks.
A key idea in our approach is to treat the image voxels as spatial effective samples, which alleviates the limited sample size issue that haunts the majority of medical imaging studies.
We demonstrate the efficacy of the method through intensive simulations, and further illustrate its advantages analyses of two functional magnetic resonance imaging datasets.
arXiv Detail & Related papers (2020-06-17T14:45:26Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.