Modeling, Inference, and Prediction in Mobility-Based Compartmental Models for Epidemiology
- URL: http://arxiv.org/abs/2406.12002v2
- Date: Fri, 6 Sep 2024 17:57:52 GMT
- Title: Modeling, Inference, and Prediction in Mobility-Based Compartmental Models for Epidemiology
- Authors: Ning Jiang, Weiqi Chu, Yao Li,
- Abstract summary: We introduce individual mobility as a key factor in disease transmission and control.
We characterize disease dynamics using mobility distribution functions for each compartment.
We infer mobility distributions from the time series of the infected population.
- Score: 5.079807662054658
- License: http://arxiv.org/licenses/nonexclusive-distrib/1.0/
- Abstract: Classical compartmental models in epidemiology often assume a homogeneous population for simplicity, which neglects the inherent heterogeneity among individuals. This assumption frequently leads to inaccurate predictions when applied to real-world data. For example, evidence has shown that classical models overestimate the final pandemic size in the H1N1-2009 and COVID-19 outbreaks. To address this issue, we introduce individual mobility as a key factor in disease transmission and control. We characterize disease dynamics using mobility distribution functions for each compartment and propose a mobility-based compartmental model that incorporates population heterogeneity. Our results demonstrate that, for the same basic reproduction number, our mobility-based model predicts a smaller final pandemic size compared to the classical models, effectively addressing the common overestimation problem. Additionally, we infer mobility distributions from the time series of the infected population. We provide sufficient conditions for uniquely identifying the mobility distribution from a dataset and propose a machine-learning-based approach to learn mobility from both synthesized and real-world data.
Related papers
- Meta Flow Matching: Integrating Vector Fields on the Wasserstein Manifold [83.18058549195855]
We argue that multiple processes in natural sciences have to be represented as vector fields on the Wasserstein manifold of probability densities.
In particular, this is crucial for personalized medicine where the development of diseases and their respective treatment response depends on the microenvironment of cells specific to each patient.
We propose Meta Flow Matching (MFM), a practical approach to integrating along these vector fields on the Wasserstein manifold by amortizing the flow model over the initial populations.
arXiv Detail & Related papers (2024-08-26T20:05:31Z) - Synthetic location trajectory generation using categorical diffusion
models [50.809683239937584]
Diffusion models (DPMs) have rapidly evolved to be one of the predominant generative models for the simulation of synthetic data.
We propose using DPMs for the generation of synthetic individual location trajectories (ILTs) which are sequences of variables representing physical locations visited by individuals.
arXiv Detail & Related papers (2024-02-19T15:57:39Z) - SPADE4: Sparsity and Delay Embedding based Forecasting of Epidemics [2.578242050187029]
We propose Sparsity and Delay Embedding based Forecasting (SPADE4) for predicting epidemics.
We show that our approach outperforms compartmental models when applied to both simulated and real data.
arXiv Detail & Related papers (2022-11-11T23:39:48Z) - A fairness assessment of mobility-based COVID-19 case prediction models [0.0]
We tested the hypothesis that bias in the mobility data used to train the predictive models might lead to unfairly less accurate predictions for certain demographic groups.
Specifically, the models tend to favor large, highly educated, wealthy young, urban, and non-black-dominated counties.
arXiv Detail & Related papers (2022-10-08T03:43:51Z) - Unifying Epidemic Models with Mixtures [28.771032745045428]
The COVID-19 pandemic has emphasized the need for a robust understanding of epidemic models.
Here, we introduce a simple mixture-based model which bridges the two approaches.
Although the model is non-mechanistic, we show that it arises as the natural outcome of a process based on a networked SIR framework.
arXiv Detail & Related papers (2022-01-07T19:42:05Z) - Multi-scale simulation of COVID-19 epidemics [0.0]
We are still facing the COVID-19 epidemics over a year after the start of the COVID-19 epidemics.
It is hard to correctly predict its future spread over weeks to come, as well as the impacts of potential political interventions.
Current epidemic models mainly fall in two approaches: compartmental models, divide the population in epidemiological classes and rely on the mathematical resolution of differential equations.
arXiv Detail & Related papers (2021-12-02T12:34:11Z) - Adversarial Sample Enhanced Domain Adaptation: A Case Study on
Predictive Modeling with Electronic Health Records [57.75125067744978]
We propose a data augmentation method to facilitate domain adaptation.
adversarially generated samples are used during domain adaptation.
Results confirm the effectiveness of our method and the generality on different tasks.
arXiv Detail & Related papers (2021-01-13T03:20:20Z) - Combining Graph Neural Networks and Spatio-temporal Disease Models to
Predict COVID-19 Cases in Germany [0.0]
Several experts have called for the necessity to account for human mobility to explain the spread of COVID-19.
Most statistical or epidemiological models cannot directly incorporate unstructured data sources, including data that may encode human mobility.
We propose a trade-off between both research directions and present a novel learning approach that combines the advantages of statistical regression and machine learning models.
arXiv Detail & Related papers (2021-01-03T16:39:00Z) - STELAR: Spatio-temporal Tensor Factorization with Latent Epidemiological
Regularization [76.57716281104938]
We develop a tensor method to predict the evolution of epidemic trends for many regions simultaneously.
STELAR enables long-term prediction by incorporating latent temporal regularization through a system of discrete-time difference equations.
We conduct experiments using both county- and state-level COVID-19 data and show that our model can identify interesting latent patterns of the epidemic.
arXiv Detail & Related papers (2020-12-08T21:21:47Z) - An Optimal Control Approach to Learning in SIDARTHE Epidemic model [67.22168759751541]
We propose a general approach for learning time-variant parameters of dynamic compartmental models from epidemic data.
We forecast the epidemic evolution in Italy and France.
arXiv Detail & Related papers (2020-10-28T10:58:59Z) - A General Framework for Survival Analysis and Multi-State Modelling [70.31153478610229]
We use neural ordinary differential equations as a flexible and general method for estimating multi-state survival models.
We show that our model exhibits state-of-the-art performance on popular survival data sets and demonstrate its efficacy in a multi-state setting.
arXiv Detail & Related papers (2020-06-08T19:24:54Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.