Segmenting Bi-Atrial Structures Using ResNext Based Framework
- URL: http://arxiv.org/abs/2503.02892v3
- Date: Sat, 04 Oct 2025 06:06:37 GMT
- Title: Segmenting Bi-Atrial Structures Using ResNext Based Framework
- Authors: Malitha Gunawardhana, Mark L Trew, Gregory B Sands, Jichao Zhao,
- Abstract summary: We propose TASSNet, a novel two-stage deep learning framework for fully automated segmentation of both left atrium (LA) and right atrium (RA)<n> TASSNet introduces two main innovations: (i) a ResNeXt-based encoder to enhance feature extraction from limited medical datasets, and (ii) a cyclical learning rate schedule to address convergence instability in highly imbalanced, small-batch 3D segmentation tasks.
- Score: 3.0838948803252904
- License: http://creativecommons.org/licenses/by/4.0/
- Abstract: Atrial Fibrillation (AF), the most common sustained cardiac arrhythmia worldwide, increasingly requires accurate bi-atrial structural assessment to guide ablation strategies, particularly in persistent AF. Late gadolinium-enhanced magnetic resonance imaging (LGE-MRI) enables visualisation of atrial fibrosis, but precise manual segmentation remains time-consuming, operator-dependent, and prone to variability. We propose TASSNet, a novel two-stage deep learning framework for fully automated segmentation of both left atrium (LA) and right atrium (RA), including atrial walls and cavities, from 3D LGE-MRI. TASSNet introduces two main innovations: (i) a ResNeXt-based encoder to enhance feature extraction from limited medical datasets, and (ii) a cyclical learning rate schedule to address convergence instability in highly imbalanced, small-batch 3D segmentation tasks. We evaluated our method on two datasets, one of which was completely out-of-distribution, without any additional training. In both cases, TASSNet successfully segmented atrial structures with high accuracy. These results highlight TASSNet's potential for robust and reproducible bi-atrial segmentation, enabling advanced fibrosis quantification and personalised ablation planning in clinical AF management.
Related papers
- Left Atrial Segmentation with nnU-Net Using MRI [0.0]
Deep learning methods have recently demonstrated superior performance in medical image segmentation tasks.<n>In this study, we applied the nnU-Net framework, an automated, self-configuring deep learning segmentation architecture, to the Left Atrial Challenge 2013 dataset.<n>The network exhibited robust generalization across variations in left atrial shape, pulmonary contrast, and image quality, accurately delineating both the atrial body and proximal veins.
arXiv Detail & Related papers (2025-11-06T05:23:45Z) - Latent Interpolation Learning Using Diffusion Models for Cardiac Volume Reconstruction [26.7771170972558]
existing methods face challenges, including reliance on predefined schemes, computational inefficiency, and dependence on additional semantic inputs.<n>We present a data-driven cardiac Latent Interpoltent Diffusion (CaLID) framework that can capture complex, non-temporal relationships between sparse slices.<n>Second, we design a computationally efficient method that operates in the latent space and speeds up 3D-heart upsampling by a factor of 24, reducing computational time.<n>Third, we extend our method to 2D+T data, enabling the effective modeling of temporal coherence.
arXiv Detail & Related papers (2025-08-19T13:36:16Z) - LesiOnTime -- Joint Temporal and Clinical Modeling for Small Breast Lesion Segmentation in Longitudinal DCE-MRI [1.5233783874742468]
We propose LesiOnTime, a novel 3D segmentation approach that mimics clinical diagnostic by jointly leveraging longitudinal imaging and BIRADS scores.<n>Our approach outperforms state-of-the-art single-timepoint and longitudinal baselines by 5% in terms of Dice Ablation studies.
arXiv Detail & Related papers (2025-08-01T10:19:53Z) - ReCoGNet: Recurrent Context-Guided Network for 3D MRI Prostate Segmentation [11.248082139905865]
We propose a hybrid architecture that models MRI sequences as annotated data.<n>Our method uses a deep, preserving pretrained DeepVLab3 backbone to extract high-level semantic features from each MRI slice and a recurrent convolutional head, built with ConvLSTM layers, to integrate information across slices.<n>Compared to state-of-the-art 2D and 3D segmentation models, our approach demonstrates superior performance in terms of precision, recall, Intersection over Union (IoU), Dice Similarity Coefficient (DSC) and robustness.
arXiv Detail & Related papers (2025-06-24T14:56:55Z) - Multi-Disease-Aware Training Strategy for Cardiac MR Image Segmentation [5.206138376072312]
Deep learning-based segmentation methods have recently garnered significant attention due to their impressive performance.
These segmentation methods are typically good at partitioning regularly shaped organs, such as the left ventricle (LV) and the myocardium (MYO)
They perform poorly on irregularly shaped organs, such as the right ventricle (RV)
arXiv Detail & Related papers (2025-03-23T01:29:27Z) - Self-supervised inter-intra period-aware ECG representation learning for detecting atrial fibrillation [41.82319894067087]
We propose an inter-intra period-aware ECG representation learning approach.
Considering ECGs of atrial fibrillation patients exhibit the irregularity in RR intervals and the absence of P-waves, we develop specific pre-training tasks for interperiod and intraperiod representations.
Our approach demonstrates remarkable AUC performances on the BTCH dataset, textiti.e., 0.953/0.996 for paroxysmal/persistent atrial fibrillation detection.
arXiv Detail & Related papers (2024-10-08T10:03:52Z) - Learning Cortico-Muscular Dependence through Orthonormal Decomposition of Density Ratios [39.3721526159124]
We present a novel application of statistical dependence estimators based on orthonormal decomposition of density ratios to model the relationship between cortical and muscle oscillations.<n>We experimentally demonstrate that eigenfunctions learned from cortico-muscular connectivity can accurately classify movements and subjects.
arXiv Detail & Related papers (2024-10-04T16:05:08Z) - Lost in Tracking: Uncertainty-guided Cardiac Cine MRI Segmentation at Right Ventricle Base [6.124743898202368]
We propose to address the currently unsolved issues in CMR segmentation, specifically at the RV base.
We propose a novel dual encoder U-Net architecture that leverages temporal incoherence to inform the segmentation when interplanar motions occur.
arXiv Detail & Related papers (2024-10-04T11:14:31Z) - Multi-Model Ensemble Approach for Accurate Bi-Atrial Segmentation in LGE-MRI of Atrial Fibrillation Patients [3.676588766498097]
Atrial fibrillation (AF) is the most prevalent form of cardiac arrhythmia and is associated with increased morbidity and mortality.
This work presents an ensemble approach that integrates multiple machine learning models, including Unet, ResNet, EfficientNet and VGG, to perform automatic bi-atrial segmentation from LGE-MRI data.
arXiv Detail & Related papers (2024-09-24T13:33:46Z) - Epicardium Prompt-guided Real-time Cardiac Ultrasound Frame-to-volume Registration [50.602074919305636]
This paper introduces a lightweight end-to-end Cardiac Ultrasound frame-to-volume Registration network, termed CU-Reg.<n>We use epicardium prompt-guided anatomical clues to reinforce the interaction of 2D sparse and 3D dense features, followed by a voxel-wise local-global aggregation of enhanced features.
arXiv Detail & Related papers (2024-06-20T17:47:30Z) - Self-calibrated convolution towards glioma segmentation [45.74830585715129]
We evaluate self-calibrated convolutions in different parts of the nnU-Net network to demonstrate that self-calibrated modules in skip connections can significantly improve the enhanced-tumor and tumor-core segmentation accuracy.
arXiv Detail & Related papers (2024-02-07T19:51:13Z) - Learning Through Guidance: Knowledge Distillation for Endoscopic Image
Classification [40.366659911178964]
Endoscopy plays a major role in identifying any underlying abnormalities within the gastrointestinal (GI) tract.
Deep learning, specifically Convolution Neural Networks (CNNs) which are designed to perform automatic feature learning without any prior feature engineering, has recently reported great benefits for GI endoscopy image analysis.
We investigate three KD-based learning frameworks, response-based, feature-based, and relation-based mechanisms, and introduce a novel multi-head attention-based feature fusion mechanism to support relation-based learning.
arXiv Detail & Related papers (2023-08-17T02:02:11Z) - MMA-RNN: A Multi-level Multi-task Attention-based Recurrent Neural
Network for Discrimination and Localization of Atrial Fibrillation [1.8037893225125925]
This paper proposes the Multi-level Multi-task Attention-based Recurrent Neural Network for three-class discrimination on patients and localization of the exact timing of AF episodes.
The model is designed as an end-to-end framework to enhance information interaction and reduce error accumulation.
arXiv Detail & Related papers (2023-02-07T19:59:55Z) - Successive Subspace Learning for Cardiac Disease Classification with
Two-phase Deformation Fields from Cine MRI [36.044984400761535]
This work proposes a lightweight successive subspace learning framework for CVD classification.
It is based on an interpretable feedforward design, in conjunction with a cardiac atlas.
Compared with 3D CNN-based approaches, our framework achieves superior classification performance with 140$times$ fewer parameters.
arXiv Detail & Related papers (2023-01-21T15:00:59Z) - Generalizing electrocardiogram delineation: training convolutional
neural networks with synthetic data augmentation [63.51064808536065]
Existing databases for ECG delineation are small, being insufficient in size and in the array of pathological conditions they represent.
This article delves has two main contributions. First, a pseudo-synthetic data generation algorithm was developed, based in probabilistically composing ECG traces given "pools" of fundamental segments, as cropped from the original databases, and a set of rules for their arrangement into coherent synthetic traces.
Second, two novel segmentation-based loss functions have been developed, which attempt at enforcing the prediction of an exact number of independent structures and at producing closer segmentation boundaries by focusing on a reduced number of samples.
arXiv Detail & Related papers (2021-11-25T10:11:41Z) - Hepatic vessel segmentation based on 3Dswin-transformer with inductive
biased multi-head self-attention [46.46365941681487]
We propose a robust end-to-end vessel segmentation network called Indu BIased Multi-Head Attention Vessel Net.
We introduce the voxel-wise embedding rather than patch-wise embedding to locate precise liver vessel voxels.
On the other hand, we propose inductive biased multi-head self-attention which learns inductive biased relative positional embedding from absolute position embedding.
arXiv Detail & Related papers (2021-11-05T10:17:08Z) - Segmentation of Cardiac Structures via Successive Subspace Learning with
Saab Transform from Cine MRI [29.894633364282555]
We propose a machine learning model, successive subspace learning with the subspace approximation with adjusted bias (Saab) transform, for accurate and efficient segmentation from cine MRI.
Our framework performed better than state-of-the-art U-Net models with 200$times$ fewer parameters in the left ventricle, right ventricle, and myocardium.
arXiv Detail & Related papers (2021-07-22T14:50:48Z) - Learning Tubule-Sensitive CNNs for Pulmonary Airway and Artery-Vein
Segmentation in CT [45.93021999366973]
Training convolutional neural networks (CNNs) for segmentation of pulmonary airway, artery, and vein is challenging.
We present a CNNs-based method for accurate airway and artery-vein segmentation in non-contrast computed tomography.
It enjoys superior sensitivity to tenuous peripheral bronchioles, arterioles, and venules.
arXiv Detail & Related papers (2020-12-10T15:56:08Z) - AtrialJSQnet: A New Framework for Joint Segmentation and Quantification
of Left Atrium and Scars Incorporating Spatial and Shape Information [22.162571400010467]
Left atrial (LA) and atrial scar segmentation from late gadolinium enhanced magnetic resonance imaging (LGE MRI) is an important task in clinical practice.
Previous methods normally solved the two tasks independently and ignored the intrinsic spatial relationship between LA and scars.
We develop a new framework, namely AtrialJSQnet, where LA segmentation, scar projection onto the LA surface, and scar quantification are performed simultaneously in an end-to-end style.
arXiv Detail & Related papers (2020-08-11T14:44:19Z) - Segmentation of the Myocardium on Late-Gadolinium Enhanced MRI based on
2.5 D Residual Squeeze and Excitation Deep Learning Model [55.09533240649176]
The aim of this work is to develop an accurate automatic segmentation method based on deep learning models for the myocardial borders on LGE-MRI.
A total number of 320 exams (with a mean number of 6 slices per exam) were used for training and 28 exams used for testing.
The performance analysis of the proposed ensemble model in the basal and middle slices was similar as compared to intra-observer study and slightly lower at apical slices.
arXiv Detail & Related papers (2020-05-27T20:44:38Z) - A Global Benchmark of Algorithms for Segmenting Late Gadolinium-Enhanced
Cardiac Magnetic Resonance Imaging [90.29017019187282]
" 2018 Left Atrium Challenge" using 154 3D LGE-MRIs, currently the world's largest cardiac LGE-MRI dataset.
Analyse of the submitted algorithms using technical and biological metrics was performed.
Results show the top method achieved a dice score of 93.2% and a mean surface to a surface distance of 0.7 mm.
arXiv Detail & Related papers (2020-04-26T08:49:17Z) - AutoHR: A Strong End-to-end Baseline for Remote Heart Rate Measurement
with Neural Searching [76.4844593082362]
We investigate the reason why existing end-to-end networks perform poorly in challenging conditions and establish a strong baseline for remote HR measurement with architecture search (NAS)
Comprehensive experiments are performed on three benchmark datasets on both intra-temporal and cross-dataset testing.
arXiv Detail & Related papers (2020-04-26T05:43:21Z)
This list is automatically generated from the titles and abstracts of the papers in this site.
This site does not guarantee the quality of this site (including all information) and is not responsible for any consequences.